myRT

myRT report for GCA_008572225.1_ASM857222v1

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Seq: VVYW01000004.1 Bacteroides cellulosilyticus strain BIOML-A7 scaffold4_size340140, whole genome shotgun sequence (340140 bp)
Overview 1 RT 1: 16707-28143 bp Neighborhood of RT #1 [16707, 28151] DUF3871 RVT-UG24 PRK15098 F5_F8_type_C Lactonase Feature: gene Location: 16707-17741 bp Ori: KAA5410143.1 Feature: domain Description: DUF3871 Location: 16782-17736 bp Feature: domain Description: DUF3871 Location: 1 6782-1 7736 bp Feature: gene Location: 19364-19879 bp Feature: gene Location: 19882-23169 bp Ori: KAA5410145.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 20422-20881 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 20422-20881 bp Feature: gene Location: 24190-27018 bp Ori: KAA5410146.1 Feature: domain Description: PRK15098 Location: 24619-26608 bp Feature: domain Description: PRK1 5098 Location: 2461 9-26608 bp Feature: domain Description: F5_F8_type_C Location: 26686-26980 bp Feature: domain Description: F5_F8_type_C Location: 26686-26980 bp Feature: gene Location: 27036-28151 bp Ori: KAA5410147.1 Feature: domain Description: Lactonase Location: 27135-28143 bp Feature: domain Description: Lactonase Location: 271 35-281 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3871 (pfam12987), RVT-UG24, PRK15098 (beta-glucosidase BglX), F5_F8_type_C (pfam00754), Lactonase (pfam10282)

Seq: VVYW01000055.1 Bacteroides cellulosilyticus strain BIOML-A7 scaffold55_size4057, whole genome shotgun sequence (4057 bp)
Overview 1 RT 1: 189-3985 bp Neighborhood of RT #1 [189, 3985] RVT-DGRs Feature: gene Location: 189-584 bp Feature: gene Location: 606-953 bp Feature: gene Location: 1334-2149 bp Ori: KAA5401673.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1667-1991 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1667-1991 bp Feature: gene Location: 2211-2411 bp Feature: gene Location: 2666-3985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYW01000003.1 Bacteroides cellulosilyticus strain BIOML-A7 scaffold3_size361471, whole genome shotgun sequence (361471 bp)
Overview 1 RT 1: 319709-322530 bp Neighborhood of RT #1 [319709, 322530] RVT-DGRs Feature: gene Location: 319709-319942 bp Feature: gene Location: 319957-320121 bp Feature: gene Location: 320323-321624 bp Ori: KAA5410633.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 320536-321133 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 2053 6-3 2113 3 bp Feature: gene Location: 321621-322106 bp Feature: gene Location: 322288-322530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYW01000018.1 Bacteroides cellulosilyticus strain BIOML-A7 scaffold18_size149066, whole genome shotgun sequence (149066 bp)
Overview 1 RT 1: 45973-57318 bp Neighborhood of RT #1 [45973, 57356] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 45973-47139 bp Feature: gene Location: 47149-53937 bp Ori: KAA5405532.1 Feature: domain Description: Laminin_G_3 Location: 49585-49966 bp Feature: domain Description: Laminin_G_3 Location: 4 9585-4 9966 bp Feature: domain Description: pfam08757 Location: 50761-51085 bp Feature: domain Description: pfam08757 Location: 50761-51085 bp Feature: domain Description: LRR_AMN1 Location: 51697-52141 bp Feature: domain Description: LRR_AMN1 Location: 51697-5214 1 bp Feature: gene Location: 54370-55665 bp Ori: KAA5405533.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54586-55177 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54 586-55177 bp Feature: gene Location: 55667-56161 bp Feature: gene Location: 56211-57356 bp Ori: KAA5405535.1 Feature: domain Description: Arm-DNA-bind_5 Location: 56235-56481 bp Feature: domain Description: Arm-DNA-bind_5 Location: 56235-564 81 bp Feature: domain Description: Phage_int_SAM_5 Location: 56520-56805 bp Feature: domain Description: Phage_int_SAM_5 Location: 56520-56805 bp Feature: domain Description: INTN1_C_like Location: 56844-57318 bp Feature: domain Description: INTN1_C_like Location: 5684 4 -57318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VVYW01000001.1 Bacteroides cellulosilyticus strain BIOML-A7 scaffold1_size598193, whole genome shotgun sequence (598193 bp)
Overview 1 RT 1: 506287-511467 bp Neighborhood of RT #1 [506287, 511472] HptA MFS_DtpA_like RVT-Retrons secD COG1237 Feature: gene Location: 506287-506823 bp Ori: KAA5411498.1 Gene: hpt Feature: domain Description: HptA Location: 506305-506815 bp Feature: domain Description: HptA Location: 5 06305 -5 06815 bp Feature: gene Location: 506863-508401 bp Ori: KAA5411499.1 Feature: domain Description: MFS_DtpA_like Location: 506884-508372 bp Feature: domain Description: MFS_DtpA_like Location: 5 06884-5 08372 bp Feature: gene Location: 508674-509795 bp Ori: KAA5411500.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 508986-509538 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 08986-5 095 38 bp Feature: gene Location: 509792-510646 bp Ori: KAA5411501.1 Feature: domain Description: secD Location: 509987-510263 bp Feature: domain Description: secD Location: 5 09987-5 10263 bp Feature: gene Location: 510666-511472 bp Ori: KAA5411502.1 Feature: domain Description: COG1237 Location: 510669-511467 bp Feature: domain Description: COG1237 Location: 5 10669-5 11467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HptA (COG0634), MFS_DtpA_like (cd17346), RVT-Retrons, secD (TIGR01129), COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II )

Seq: VVYW01000002.1 Bacteroides cellulosilyticus strain BIOML-A7 scaffold2_size460437, whole genome shotgun sequence (460437 bp)
Overview 1 RT 1: 334968-343377 bp 2 RT 2: 441154-445091 bp Neighborhood of RT #1 [334968, 343742] DDE_Tnp_1_assoc YhhI YhhI DUF4890 RVT-GII GIIM LacZ Alginate_lyase Hepar_II_III Neighborhood of RT #2 [441154, 445091] RVT-DGRs Feature: gene Location: 334968-336119 bp Ori: KAA5410947.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 334986-335241 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 334986 -335241 bp Feature: domain Description: YhhI Location: 335397-335604 bp Feature: domain Description: YhhI Location: 335397-3356 04 bp Feature: domain Description: YhhI Location: 335811-336039 bp Feature: domain Description: YhhI Location: 335811-336 039 bp Feature: gene Location: 336532-337023 bp Ori: KAA5410948.1 Feature: domain Description: DUF4890 Location: 336631-336955 bp Feature: domain Description: DUF4890 Location: 336 6 31-336 955 bp Feature: gene Location: 337688-338929 bp Ori: KAA5411063.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337853-338468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337853-33846 8 bp Feature: domain Description: GIIM Note: maturase Location: 338522-338753 bp Feature: domain Description: GIIM Note: maturase Location: 338522-338753 bp Feature: gene Location: 339036-341822 bp Ori: KAA5410949.1 Feature: domain Description: LacZ Location: 339114-340380 bp Feature: domain Description: LacZ Location: 339114-340380 bp Feature: gene Location: 341832-343742 bp Ori: KAA5410950.1 Feature: domain Description: Alginate_lyase Location: 342225-342744 bp Feature: domain Description: Alginate_lyase Location: 342225-342744 bp Feature: domain Description: Hepar_II_III Location: 342996-343377 bp Feature: domain Description: Hepar_II_III Location: 342996 -343377 bp Feature: gene Location: 441154-441432 bp Feature: gene Location: 441442-442803 bp Feature: gene Location: 443136-444323 bp Ori: KAA5411039.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 443469-444096 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44346 9-444096 bp Feature: gene Location: 444286-444714 bp Feature: gene Location: 444711-445091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433), DUF4890 (pfam16231), RVT-GII, GIIM (pfam08388), LacZ (COG3250), Alginate_lyase (pfam05426), Hepar_II_III (pfam07940), RVT-DGRs