myRT

myRT report for GCA_008572235.1_ASM857223v1

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Seq: VVYV01000109.1 Bacteroides cellulosilyticus strain BIOML-A6 scaffold109_size8416, whole genome shotgun sequence (8416 bp)
Overview 1 RT 1: 3-7780 bp Neighborhood of RT #1 [3, 7780] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-1145 bp Feature: domain Description: Bac_Flav_CT_G Location: 6-1128 bp Feature: domain Description: Bac_Flav_CT_G Location: 6-1 1 28 bp Feature: gene Location: 1696-3507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1960-2782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 960-2782 bp Feature: domain Description: Intron_maturas2 Location: 2851-3196 bp Feature: domain Description: Intron_maturas2 Location: 2851 -31 96 bp Feature: domain Description: HNHc Note: nucleases Location: 3334-3478 bp Feature: domain Description: HNHc Note: nucleases Location: 3334-3478 bp Feature: gene Location: 3495-4097 bp Feature: domain Description: Bac_Flav_CT_G Location: 3618-4086 bp Feature: domain Description: Bac_Flav_CT_G Location: 361 8-4086 bp Feature: gene Location: 4666-6489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4930-5752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4930-5752 bp Feature: domain Description: Intron_maturas2 Location: 5926-6178 bp Feature: domain Description: Intron_maturas2 Location: 5926-61 78 bp Feature: domain Description: HNHc Note: nucleases Location: 6280-6451 bp Feature: domain Description: HNHc Note: nucleases Location: 6280-6451 bp Feature: gene Location: 6584-6712 bp Feature: gene Location: 6731-7780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVYV01000001.1 Bacteroides cellulosilyticus strain BIOML-A6 scaffold1_size400373, whole genome shotgun sequence (400373 bp)
Overview 1 RT 1: 344081-348385 bp Neighborhood of RT #1 [344081, 348393] RVT-Retrons MFS_DtpA_like HptA Feature: gene Location: 344081-344350 bp Feature: gene Location: 344412-344666 bp Feature: gene Location: 344887-346008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 345199-345751 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 345199-345751 bp Feature: gene Location: 346279-347817 bp Feature: domain Description: MFS_DtpA_like Location: 346300-347788 bp Feature: domain Description: MFS_DtpA_like Location: 346300-347788 bp Feature: gene Location: 347857-348393 bp Feature: domain Description: HptA Location: 347875-348385 bp Feature: domain Description: HptA Location: 347875-348385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, MFS_DtpA_like (cd17346), HptA (COG0634)

Seq: VVYV01000059.1 Bacteroides cellulosilyticus strain BIOML-A6 scaffold59_size38896, whole genome shotgun sequence (38896 bp)
Overview 1 RT 1: 2-3335 bp Neighborhood of RT #1 [2, 3676] RVT-DGRs MutS_I TMAO_torS Feature: gene Location: 2-850 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8-506 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8-506 bp Feature: gene Location: 847-1323 bp Feature: domain Description: MutS_I Location: 898-1093 bp Feature: domain Description: MutS_I Location: 898-1093 bp Feature: gene Location: 1325-3676 bp Feature: domain Description: TMAO_torS Location: 2243-3335 bp Feature: domain Description: TMAO_torS Location: 2243 -3 3 3 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, MutS_I (pfam01624), TMAO_torS (TIGR02956)

Seq: VVYV01000005.1 Bacteroides cellulosilyticus strain BIOML-A6 scaffold5_size195143, whole genome shotgun sequence (195143 bp)
Overview 1 RT 1: 112690-119578 bp Neighborhood of RT #1 [112690, 119943] DUF4890 RVT-GII GIIM LacZ Alginate_lyase Hepar_II_III Feature: gene Location: 112690-113226 bp Feature: domain Description: DUF4890 Location: 112792-113158 bp Feature: domain Description: DUF4 890 Location: 112792-113158 bp Feature: gene Location: 113720-113929 bp Feature: gene Location: 113946-115130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114054-114669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 054 -114 669 bp Feature: domain Description: GIIM Note: maturase Location: 114723-114954 bp Feature: domain Description: GIIM Note: maturase Location: 114 723-114 954 bp Feature: gene Location: 115237-118023 bp Feature: domain Description: LacZ Location: 115315-116581 bp Feature: domain Description: LacZ Location: 115315-116581 bp Feature: gene Location: 118033-119943 bp Feature: domain Description: Alginate_lyase Location: 118426-118945 bp Feature: domain Description: Alginate_lyase Location: 1184 26-11894 5 bp Feature: domain Description: Hepar_II_III Location: 119197-119578 bp Feature: domain Description: Hepar_II_III Location: 119197-119578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4890 (pfam16231), RVT-GII, GIIM (pfam08388), LacZ (COG3250), Alginate_lyase (pfam05426), Hepar_II_III (pfam07940)

Seq: VVYV01000073.1 Bacteroides cellulosilyticus strain BIOML-A6 scaffold73_size26119, whole genome shotgun sequence (26119 bp)
Overview 1 RT 1: 16436-19631 bp Neighborhood of RT #1 [16436, 19631] Gp49 HTH_XRE RVT-DGRs Feature: gene Location: 16436-16780 bp Feature: domain Description: Gp49 Location: 16490-16751 bp Feature: domain Description: Gp49 Location: 16490-1675 1 bp Feature: gene Location: 16785-17096 bp Feature: domain Description: HTH_XRE Location: 16899-17055 bp Feature: domain Description: HTH_XRE Location: 16899-1705 5 bp Feature: gene Location: 17347-18837 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17740-18337 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17740-18337 bp Feature: gene Location: 18906-19388 bp Feature: gene Location: 19395-19631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gp49 (pfam05973), HTH_XRE (smart00530), RVT-DGRs

Seq: VVYV01000094.1 Bacteroides cellulosilyticus strain BIOML-A6 scaffold94_size13997, whole genome shotgun sequence (13997 bp)
Overview 1 RT 1: 10512-13826 bp Neighborhood of RT #1 [10512, 13954] DDE_Tnp_1 COG1373 RVT-AbiP2 Feature: gene Location: 10512-11492 bp Feature: domain Description: DDE_Tnp_1 Location: 10908-11427 bp Feature: domain Description: DDE_Tnp_1 Location: 10908-11427 bp Feature: gene Location: 11623-12882 bp Feature: domain Description: COG1373 Location: 11629-12862 bp Feature: domain Description: COG1373 Location: 116 29-1286 2 bp Feature: gene Location: 12941-13954 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 13370-13826 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 13370-13826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-AbiP2