myRT

myRT report for GCA_008572245.1_ASM857224v1

Download annotations/find similar RTs

Seq: VVYU01000262.1 Bacteroides cellulosilyticus strain BIOML-A5 scaffold262_size8020, whole genome shotgun sequence (8020 bp)
Overview 1 RT 1: 680-5219 bp Neighborhood of RT #1 [680, 5278] HptA MFS_DtpA_like RVT-Retrons secD COG1237 Feature: gene Location: 680-1216 bp Ori: KAA5433836.1 Gene: hpt Feature: domain Description: HptA Location: 698-1208 bp Feature: domain Description: HptA Location: 698-1 208 bp Feature: gene Location: 1256-2794 bp Ori: KAA5433837.1 Feature: domain Description: MFS_DtpA_like Location: 1277-2765 bp Feature: domain Description: MFS_DtpA_like Location: 1 277-2765 bp Feature: gene Location: 3065-4186 bp Ori: KAA5433838.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3377-3929 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3377-3929 bp Feature: gene Location: 4183-5034 bp Ori: KAA5433839.1 Feature: domain Description: secD Location: 4333-4588 bp Feature: domain Description: secD Location: 4333-4588 bp Feature: gene Location: 5054-5278 bp Ori: KAA5433840.1 Feature: domain Description: COG1237 Location: 5057-5219 bp Feature: domain Description: COG1 237 Location: 5057-521 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HptA (COG0634), MFS_DtpA_like (cd17346), RVT-Retrons, secD (TIGR01129), COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II )

Seq: VVYU01000062.1 Bacteroides cellulosilyticus strain BIOML-A5 scaffold62_size19474, whole genome shotgun sequence (19474 bp)
Overview 1 RT 1: 15611-18339 bp Neighborhood of RT #1 [15611, 18339] RVT-DGRs Feature: gene Location: 15611-15853 bp Feature: gene Location: 16033-16518 bp Feature: gene Location: 16515-17819 bp Ori: KAA5437792.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16728-17322 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1672 8-1732 2 bp Feature: gene Location: 17914-18148 bp Feature: gene Location: 18145-18339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYU01000717.1 Bacteroides cellulosilyticus strain BIOML-A5 scaffold717_size2486, whole genome shotgun sequence (2486 bp)
Overview 1 RT 1: 1-1851 bp Neighborhood of RT #1 [1, 1922] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-86 bp Feature: gene Location: 111-1922 bp Ori: KAA5429280.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 75-1197 bp Feature: domain Description: Intron_maturas2 Location: 1386-1596 bp Feature: domain Description: Intron_maturas2 Location: 13 86-1596 bp Feature: domain Description: HNHc Note: nucleases Location: 1746-1851 bp Feature: domain Description: HNHc Note: nucleases Location: 1746-1851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVYU01000601.1 Bacteroides cellulosilyticus strain BIOML-A5 scaffold601_size3321, whole genome shotgun sequence (3321 bp)
Overview 1 RT 1: 2125-3321 bp Neighborhood of RT #1 [2125, 3321] DUF3846 RVT-UG27 Feature: gene Location: 2125-2364 bp Feature: gene Location: 2365-2640 bp Ori: KAA5430141.1 Feature: domain Description: DUF3846 Location: 2410-2626 bp Feature: domain Description: DUF384 6 Location: 24 10-2626 bp Feature: gene Location: 2850-3321 bp Ori: KAA5430142.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 3039-3321 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 3039-3321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3846 (pfam12957), RVT-UG27

Seq: VVYU01000725.1 Bacteroides cellulosilyticus strain BIOML-A5 scaffold725_size2423, whole genome shotgun sequence (2423 bp)
Overview 1 RT 1: 107-1889 bp Neighborhood of RT #1 [107, 1918] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107-1918 bp Ori: KAA5429239.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1193 bp Feature: domain Description: Intron_maturas2 Location: 1268-1598 bp Feature: domain Description: Intron_maturas2 Location: 1268-15 98 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Feature: domain Description: HNHc Note: nucleases Location: 1739-1889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVYU01000142.1 Bacteroides cellulosilyticus strain BIOML-A5 scaffold142_size13243, whole genome shotgun sequence (13243 bp)
Overview 1 RT 1: 1848-10480 bp Neighborhood of RT #1 [1848, 10480] Alginate_lyase Hepar_II_III LacZ RVT-GII GIIM DUF4890 Feature: gene Location: 1848-3758 bp Ori: KAA5435889.1 Feature: domain Description: Alginate_lyase Location: 2241-2760 bp Feature: domain Description: Alginate_lyase Location: 2241-276 0 bp Feature: domain Description: Hepar_II_III Location: 3012-3393 bp Feature: domain Description: Hepar_II_III Location: 3012-3393 bp Feature: gene Location: 3768-6554 bp Ori: KAA5435890.1 Feature: domain Description: LacZ Location: 3846-5112 bp Feature: domain Description: LacZ Location: 3846 -5112 bp Feature: gene Location: 6661-7902 bp Ori: KAA5435897.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6826-7441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 826 -7441 bp Feature: domain Description: GIIM Note: maturase Location: 7495-7726 bp Feature: domain Description: GIIM Note: maturase Location: 7495-7726 bp Feature: gene Location: 8567-9103 bp Ori: KAA5435891.1 Feature: domain Description: DUF4890 Location: 8669-9035 bp Feature: domain Description: DUF4890 Location: 86 6 9-9035 bp Feature: gene Location: 9578-10480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), Hepar_II_III (pfam07940), LacZ (COG3250), RVT-GII, GIIM (pfam08388), DUF4890 (pfam16231)