myRT

myRT report for GCA_008572285.1_ASM857228v1

Download annotations/find similar RTs

Seq: VVYR01000157.1 Bacteroides cellulosilyticus strain BIOML-A1 scaffold157_size11131, whole genome shotgun sequence (11131 bp)
Overview 1 RT 1: 1-1548 bp Neighborhood of RT #1 [1, 1548] RVT-UG27 DUF3846 Feature: gene Location: 1-823 bp Ori: KAA5437762.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 190-823 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 90-823 bp Feature: gene Location: 1033-1308 bp Ori: KAA5437763.1 Feature: domain Description: DUF3846 Location: 1078-1294 bp Feature: domain Description: DUF3846 Location: 1 078-1 294 bp Feature: gene Location: 1309-1548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DUF3846 (pfam12957)

Seq: VVYR01000874.1 Bacteroides cellulosilyticus strain BIOML-A1 scaffold874_size1820, whole genome shotgun sequence (1820 bp)
Overview 1 RT 1: 1-1594 bp Neighborhood of RT #1 [1, 1770] RVT-GII GIIM Feature: gene Location: 1-992 bp Feature: gene Location: 1099-1770 bp Ori: KAA5428799.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102-1309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102 -1309 bp Feature: domain Description: GIIM Note: maturase Location: 1363-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1363-1594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VVYR01000297.1 Bacteroides cellulosilyticus strain BIOML-A1 scaffold297_size7222, whole genome shotgun sequence (7222 bp)
Overview 1 RT 1: 3286-7183 bp Neighborhood of RT #1 [3286, 7222] COG1237 secD RVT-Retrons MFS_DtpA_like Feature: gene Location: 3286-3510 bp Ori: KAA5434765.1 Feature: domain Description: COG1237 Location: 3289-3451 bp Feature: domain Description: COG123 7 Location: 3 289-3 451 bp Feature: gene Location: 3530-4381 bp Ori: KAA5434766.1 Feature: domain Description: secD Location: 3680-3935 bp Feature: domain Description: secD Location: 3 680-3 93 5 bp Feature: gene Location: 4378-5499 bp Ori: KAA5434767.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4690-5242 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4690-5242 bp Feature: gene Location: 5770-7222 bp Ori: KAA5434768.1 Feature: domain Description: MFS_DtpA_like Location: 5791-7183 bp Feature: domain Description: MFS_DtpA_like Location: 5791-7183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II ), secD (TIGR01129), RVT-Retrons, MFS_DtpA_like (cd17346)

Seq: VVYR01000995.1 Bacteroides cellulosilyticus strain BIOML-A1 scaffold995_size1377, whole genome shotgun sequence (1377 bp)
Overview 1 RT 1: 506-1217 bp Neighborhood of RT #1 [506, 1377] RVT-GII Feature: gene Location: 506-1377 bp Ori: KAA5426411.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VVYR01000375.1 Bacteroides cellulosilyticus strain BIOML-A1 scaffold375_size5916, whole genome shotgun sequence (5916 bp)
Overview 1 RT 1: 1-3089 bp Neighborhood of RT #1 [1, 3089] RVT-GII DUF4890 Feature: gene Location: 1-511 bp Ori: KAA5433524.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-5 05 bp Feature: gene Location: 1176-1712 bp Ori: KAA5433519.1 Feature: domain Description: DUF4890 Location: 1278-1644 bp Feature: domain Description: DUF4890 Location: 1278-1644 bp Feature: gene Location: 2187-3089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4890 (pfam16231)

Seq: VVYR01000699.1 Bacteroides cellulosilyticus strain BIOML-A1 scaffold699_size2721, whole genome shotgun sequence (2721 bp)
Overview 1 RT 1: 605-2721 bp Neighborhood of RT #1 [605, 2721] RVT-DGRs Feature: gene Location: 605-799 bp Feature: gene Location: 796-1030 bp Feature: gene Location: 1125-2429 bp Ori: KAA5430034.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1338-1932 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1338-1932 bp Feature: gene Location: 2426-2721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYR01000734.1 Bacteroides cellulosilyticus strain BIOML-A1 scaffold734_size2485, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 565-2485 bp Neighborhood of RT #1 [565, 2485] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 565-2376 bp Ori: KAA5429753.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: domain Description: Intron_maturas2 Location: 1840-2050 bp Feature: domain Description: Intron_maturas2 Location: 1840-2050 bp Feature: domain Description: HNHc Note: nucleases Location: 2200-2305 bp Feature: domain Description: HNHc Note: nucleases Location: 2200-2305 bp Feature: gene Location: 2401-2485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVYR01000292.1 Bacteroides cellulosilyticus strain BIOML-A1 scaffold292_size7280, whole genome shotgun sequence (7280 bp)
Overview 1 RT 1: 5307-7251 bp Neighborhood of RT #1 [5307, 7280] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 5307-5687 bp Ori: KAA5434850.1 Feature: domain Description: DUF3876 Location: 5388-5652 bp Feature: domain Description: DUF38 76 Location: 538 8 -5652 bp Feature: gene Location: 5728-6159 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 5731-6142 bp Feature: domain Description: Bac_Flav_CT_G Location: 5731-6142 bp Feature: gene Location: 6264-7280 bp Ori: KAA5434851.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6360-6555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6360-6555 bp Feature: domain Description: Intron_maturas2 Location: 6630-6957 bp Feature: domain Description: Intron_maturas2 Location: 6630-6957 bp Feature: domain Description: HNHc Note: nucleases Location: 7101-7251 bp Feature: domain Description: HNHc Note: nucleases Location: 7101-7251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)