myRT

myRT report for GCA_008572295.1_ASM857229v1

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Seq: VVYT01000030.1 Bacteroides cellulosilyticus strain BIOML-A3 scaffold30_size60038, whole genome shotgun sequence (60038 bp)
Overview 1 RT 1: 43668-47104 bp Neighborhood of RT #1 [43668, 47104] RVT-UG27 DUF3846 Feature: gene Location: 43668-43895 bp Feature: gene Location: 44407-44775 bp Feature: gene Location: 45114-46379 bp Ori: KAA5425935.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 45303-45939 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 45303-45939 bp Feature: gene Location: 46589-46864 bp Ori: KAA5425936.1 Feature: domain Description: DUF3846 Location: 46634-46850 bp Feature: domain Description: DUF3846 Location: 46634-46850 bp Feature: gene Location: 46865-47104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DUF3846 (pfam12957)

Seq: VVYT01000097.1 Bacteroides cellulosilyticus strain BIOML-A3 scaffold97_size22864, whole genome shotgun sequence (22864 bp)
Overview 1 RT 1: 14856-19395 bp Neighborhood of RT #1 [14856, 19454] HptA MFS_DtpA_like RVT-Retrons secD COG1237 Feature: gene Location: 14856-15392 bp Ori: KAA5422588.1 Gene: hpt Feature: domain Description: HptA Location: 14874-15384 bp Feature: domain Description: HptA Location: 14874-15384 bp Feature: gene Location: 15432-16970 bp Ori: KAA5422589.1 Feature: domain Description: MFS_DtpA_like Location: 15453-16941 bp Feature: domain Description: MFS_DtpA_like Location: 15453-16941 bp Feature: gene Location: 17241-18362 bp Ori: KAA5422590.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17553-18105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17553-18105 bp Feature: gene Location: 18359-19210 bp Ori: KAA5422591.1 Feature: domain Description: secD Location: 18509-18764 bp Feature: domain Description: secD Location: 18509-18764 bp Feature: gene Location: 19230-19454 bp Ori: KAA5422592.1 Feature: domain Description: COG1237 Location: 19233-19395 bp Feature: domain Description: COG12 37 Location: 192 33-19395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HptA (COG0634), MFS_DtpA_like (cd17346), RVT-Retrons, secD (TIGR01129), COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II )

Seq: VVYT01000009.1 Bacteroides cellulosilyticus strain BIOML-A3 scaffold9_size121257, whole genome shotgun sequence (121257 bp)
Overview 1 RT 1: 58995-67627 bp Neighborhood of RT #1 [58995, 67627] Alginate_lyase Hepar_II_III LacZ RVT-GII GIIM DUF4890 Feature: gene Location: 58995-60905 bp Ori: KAA5427420.1 Feature: domain Description: Alginate_lyase Location: 59388-59907 bp Feature: domain Description: Alginate_lyase Location: 593 88-59907 bp Feature: domain Description: Hepar_II_III Location: 60159-60540 bp Feature: domain Description: Hepar_II_III Location: 60159-60540 bp Feature: gene Location: 60915-63701 bp Ori: KAA5427421.1 Feature: domain Description: LacZ Location: 60993-62259 bp Feature: domain Description: LacZ Location: 60993 -62259 bp Feature: gene Location: 63808-65049 bp Ori: KAA5427460.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63973-64588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 973 -64588 bp Feature: domain Description: GIIM Note: maturase Location: 64642-64873 bp Feature: domain Description: GIIM Note: maturase Location: 64642-64873 bp Feature: gene Location: 65714-66250 bp Ori: KAA5427422.1 Feature: domain Description: DUF4890 Location: 65816-66182 bp Feature: domain Description: DUF4890 Location: 65816-66182 bp Feature: gene Location: 66725-67627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), Hepar_II_III (pfam07940), LacZ (COG3250), RVT-GII, GIIM (pfam08388), DUF4890 (pfam16231)

Seq: VVYT01000214.1 Bacteroides cellulosilyticus strain BIOML-A3 scaffold214_size2485, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 565-2485 bp Neighborhood of RT #1 [565, 2485] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 565-2376 bp Ori: KAA5412485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: domain Description: Intron_maturas2 Location: 1840-2050 bp Feature: domain Description: Intron_maturas2 Location: 184 0-2050 bp Feature: domain Description: HNHc Note: nucleases Location: 2200-2305 bp Feature: domain Description: HNHc Note: nucleases Location: 2200-2305 bp Feature: gene Location: 2401-2485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVYT01000080.1 Bacteroides cellulosilyticus strain BIOML-A3 scaffold80_size30108, whole genome shotgun sequence (30108 bp)
Overview 1 RT 1: 4809-7537 bp Neighborhood of RT #1 [4809, 7537] RVT-DGRs Feature: gene Location: 4809-5003 bp Feature: gene Location: 5000-5234 bp Feature: gene Location: 5329-6633 bp Ori: KAA5424078.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5542-6136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 5 42-6136 bp Feature: gene Location: 6630-7115 bp Feature: gene Location: 7295-7537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs