myRT

myRT report for GCA_008572305.1_ASM857230v1

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Seq: VVYQ01000015.1 Bacteroides caccae strain BIOML-A32 scaffold15_size134755, whole genome shotgun sequence (134755 bp)
Overview 1 RT 1: 39304-44612 bp Neighborhood of RT #1 [39304, 48733] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 39304-39546 bp Feature: gene Location: 39725-40210 bp Feature: gene Location: 40207-41577 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40486-41161 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40486-41 1 61 bp Feature: gene Location: 41600-41818 bp Feature: gene Location: 42014-48733 bp Feature: domain Description: Laminin_G_3 Location: 43457-43535 bp Feature: domain Description: Laminin_G_3 Location: 43457-43535 bp Feature: domain Description: Laminin_G_3 Location: 44186-44612 bp Feature: domain Description: Laminin_G_3 Location: 441 86-4461 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VVYQ01000001.1 Bacteroides caccae strain BIOML-A32 scaffold1_size380707, whole genome shotgun sequence (380707 bp)
Overview 1 RT 1: 245091-255260 bp Neighborhood of RT #1 [245091, 255298] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 245091-251879 bp Feature: domain Description: Laminin_G_3 Location: 247530-247908 bp Feature: domain Description: Laminin_G_3 Location: 2 47530-2 47908 bp Feature: domain Description: pfam08757 Location: 248703-249027 bp Feature: domain Description: pfam08757 Location: 2 48703-2 4902 7 bp Feature: domain Description: LRR_AMN1 Location: 249639-250083 bp Feature: domain Description: LRR_AMN1 Location: 2 49639-2 50083 bp Feature: gene Location: 251941-252108 bp Feature: gene Location: 252312-253607 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 252522-253200 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 52 52 2 -2 532 00 bp Feature: gene Location: 253609-254103 bp Feature: gene Location: 254153-255298 bp Feature: domain Description: Arm-DNA-bind_5 Location: 254177-254423 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 54177-2 5442 3 bp Feature: domain Description: Phage_int_SAM_5 Location: 254462-254747 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 54462 -2 54747 bp Feature: domain Description: INTN1_C_like Location: 254786-255260 bp Feature: domain Description: INTN1_C_like Location: 2 54786-2 552 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VVYQ01000037.1 Bacteroides caccae strain BIOML-A32 scaffold37_size41879, whole genome shotgun sequence (41879 bp)
Overview 1 RT 1: 5550-9696 bp Neighborhood of RT #1 [5550, 9696] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 5550-6761 bp Feature: domain Description: TipAS Location: 5574-5877 bp Feature: domain Description: TipAS Location: 5574-5877 bp Feature: domain Description: COG2369 Location: 5997-6183 bp Feature: domain Description: COG23 69 Location: 5997-6183 bp Feature: domain Description: LPD3 Location: 6402-6684 bp Feature: domain Description: LPD3 Location: 6402-6684 bp Feature: gene Location: 6859-7092 bp Feature: gene Location: 7468-8769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7678-8356 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7678-83 56 bp Feature: gene Location: 8802-9251 bp Feature: gene Location: 9454-9696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: VVYQ01000049.1 Bacteroides caccae strain BIOML-A32 scaffold49_size37869, whole genome shotgun sequence (37869 bp)
Overview 1 RT 1: 3945-10829 bp Neighborhood of RT #1 [3945, 10829] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 3945-5492 bp Feature: domain Description: AAA_25 Location: 4560-5022 bp Feature: domain Description: AAA_25 Location: 4 560-5022 bp Feature: gene Location: 5704-5886 bp Feature: gene Location: 6434-8242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6698-7520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6698-7520 bp Feature: domain Description: Intron_maturas2 Location: 7589-7898 bp Feature: domain Description: Intron_maturas2 Location: 7589-7898 bp Feature: gene Location: 8214-9143 bp Feature: domain Description: Toprim_2 Location: 8766-9054 bp Feature: domain Description: Toprim_2 Location: 8766-9054 bp Feature: gene Location: 9426-10829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: VVYQ01000004.1 Bacteroides caccae strain BIOML-A32 scaffold4_size243466, whole genome shotgun sequence (243466 bp)
Overview 1 RT 1: 227726-230458 bp 2 RT 2: 235632-240529 bp Neighborhood of RT #1 [227726, 230458] DUF4133 DUF4134 RVT_N RVT-GII GIIM Neighborhood of RT #2 [235632, 240543] YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C Imm17 Feature: gene Location: 227726-228061 bp Feature: domain Description: DUF4133 Location: 227753-228020 bp Feature: domain Description: DUF4133 Location: 22775 3-228020 bp Feature: gene Location: 228073-228309 bp Feature: domain Description: DUF4134 Location: 228214-228304 bp Feature: domain Description: DUF4134 Location: 228214-228304 bp Feature: gene Location: 228312-229967 bp Feature: RT Description: RVT_N Location: 228369-228606 bp Feature: RT Description: RVT_N Location: 228369-228606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228657-229305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22865 7-229305 bp Feature: domain Description: GIIM Note: maturase Location: 229362-229593 bp Feature: domain Description: GIIM Note: maturase Location: 229362-2295 93 bp Feature: gene Location: 230052-230225 bp Feature: gene Location: 230249-230458 bp Feature: gene Location: 235632-236795 bp Feature: domain Description: YWFCY Location: 235638-235815 bp Feature: domain Description: YWFCY Location: 235 638-235 815 bp Feature: gene Location: 237089-237316 bp Feature: gene Location: 237322-239139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237589-238411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2375 89-238411 bp Feature: domain Description: Intron_maturas2 Location: 238555-238789 bp Feature: domain Description: Intron_maturas2 Location: 2385 5 5 -238789 bp Feature: domain Description: HNHc Note: nucleases Location: 238960-239110 bp Feature: domain Description: HNHc Note: nucleases Location: 238960-239110 bp Feature: gene Location: 239103-240107 bp Feature: domain Description: TraG-D_C Location: 239481-239814 bp Feature: domain Description: TraG-D_C Location: 239481-239814 bp Feature: gene Location: 240235-240543 bp Feature: domain Description: Imm17 Location: 240352-240529 bp Feature: domain Description: Imm17 Location: 24035 2-2405 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), Imm17 (pfam15562)

Seq: VVYQ01000054.1 Bacteroides caccae strain BIOML-A32 scaffold54_size14266, whole genome shotgun sequence (14266 bp)
Overview 1 RT 1: 11498-14070 bp Neighborhood of RT #1 [11498, 14141] DUF4134 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 11498-11788 bp Feature: domain Description: DUF4134 Location: 11573-11771 bp Feature: domain Description: DUF4134 Location: 11573-11771 bp Feature: gene Location: 11800-12150 bp Feature: gene Location: 12330-14141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12594-13416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12594-13416 bp Feature: domain Description: Intron_maturas2 Location: 13605-13815 bp Feature: domain Description: Intron_maturas2 Location: 136 05-13815 bp Feature: domain Description: HNHc Note: nucleases Location: 13965-14070 bp Feature: domain Description: HNHc Note: nucleases Location: 1396 5-14070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)