myRT

myRT report for GCA_008572355.1_ASM857235v1

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Seq: VVYP01000016.1 Bacteroides caccae strain BIOML-A31 scaffold16_size135130, whole genome shotgun sequence (135130 bp)
Overview 1 RT 1: 86398-95827 bp Neighborhood of RT #1 [86398, 95827] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 86398-93117 bp Feature: domain Description: Laminin_G_3 Location: 87841-87919 bp Feature: domain Description: Laminin_G_3 Location: 87841 -8791 9 bp Feature: domain Description: Laminin_G_3 Location: 88570-88996 bp Feature: domain Description: Laminin_G_3 Location: 88570-88996 bp Feature: gene Location: 93361-93531 bp Feature: gene Location: 93554-94924 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93833-94508 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93833-94508 bp Feature: gene Location: 94921-95406 bp Feature: gene Location: 95585-95827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: VVYP01000001.1 Bacteroides caccae strain BIOML-A31 scaffold1_size380905, whole genome shotgun sequence (380905 bp)
Overview 1 RT 1: 245179-255348 bp Neighborhood of RT #1 [245179, 255386] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 245179-251967 bp Feature: domain Description: Laminin_G_3 Location: 247618-247996 bp Feature: domain Description: Laminin_G_3 Location: 2 47618-2 47996 bp Feature: domain Description: pfam08757 Location: 248791-249115 bp Feature: domain Description: pfam08757 Location: 2 48791-2 49115 bp Feature: domain Description: LRR_AMN1 Location: 249727-250171 bp Feature: domain Description: LRR_AMN1 Location: 2 4972 7-2 50171 bp Feature: gene Location: 252029-252196 bp Feature: gene Location: 252400-253695 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 252610-253288 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 52 610-2 532 88 bp Feature: gene Location: 253697-254191 bp Feature: gene Location: 254241-255386 bp Feature: domain Description: Arm-DNA-bind_5 Location: 254265-254511 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 542 65-2 54511 bp Feature: domain Description: Phage_int_SAM_5 Location: 254550-254835 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 54550-2 54835 bp Feature: domain Description: INTN1_C_like Location: 254874-255348 bp Feature: domain Description: INTN1_C_like Location: 2 54874-2 55348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VVYP01000024.1 Bacteroides caccae strain BIOML-A31 scaffold24_size79248, whole genome shotgun sequence (79248 bp)
Overview 1 RT 1: 42919-47065 bp Neighborhood of RT #1 [42919, 47065] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 42919-44130 bp Feature: domain Description: TipAS Location: 42943-43246 bp Feature: domain Description: TipAS Location: 42943 -43 246 bp Feature: domain Description: COG2369 Location: 43366-43552 bp Feature: domain Description: COG23 69 Location: 43 3 66-43 552 bp Feature: domain Description: LPD3 Location: 43771-44053 bp Feature: domain Description: LPD3 Location: 43 771-44053 bp Feature: gene Location: 44228-44461 bp Feature: gene Location: 44837-46138 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45047-45725 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45047-45725 bp Feature: gene Location: 46171-46620 bp Feature: gene Location: 46823-47065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: VVYP01000026.1 Bacteroides caccae strain BIOML-A31 scaffold26_size136276, whole genome shotgun sequence (136181 bp)
Overview 1 RT 1: 74730-78208 bp Neighborhood of RT #1 [74730, 78285] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 74730-75053 bp Feature: domain Description: DUF4134 Location: 74754-75039 bp Feature: domain Description: DUF4 134 Location: 74 754 -75039 bp Feature: gene Location: 75114-75404 bp Feature: domain Description: DUF4134 Location: 75189-75387 bp Feature: domain Description: DUF4 134 Location: 75189-75387 bp Feature: gene Location: 75946-77757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76210-77032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76210-77032 bp Feature: domain Description: Intron_maturas2 Location: 77221-77431 bp Feature: domain Description: Intron_maturas2 Location: 77221-774 31 bp Feature: domain Description: HNHc Note: nucleases Location: 77581-77686 bp Feature: domain Description: HNHc Note: nucleases Location: 77581-77686 bp Feature: gene Location: 77782-77976 bp Feature: domain Description: DUF4134 Location: 77872-77962 bp Feature: domain Description: DUF4 134 Location: 77872-77962 bp Feature: gene Location: 77989-78285 bp Feature: domain Description: DUF4133 Location: 78031-78208 bp Feature: domain Description: DUF4 133 Location: 78031-78208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: VVYP01000005.1 Bacteroides caccae strain BIOML-A31 scaffold5_size265980, whole genome shotgun sequence (265980 bp)
Overview 1 RT 1: 249624-252356 bp 2 RT 2: 257530-262427 bp Neighborhood of RT #1 [249624, 252356] DUF4133 DUF4134 RVT_N RVT-GII GIIM Neighborhood of RT #2 [257530, 262441] YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C Imm17 Feature: gene Location: 249624-249959 bp Feature: domain Description: DUF4133 Location: 249651-249918 bp Feature: domain Description: DUF4133 Location: 24965 1-249918 bp Feature: gene Location: 249971-250213 bp Feature: domain Description: DUF4134 Location: 250118-250208 bp Feature: domain Description: DUF4134 Location: 25 0118-25 0208 bp Feature: gene Location: 250210-251865 bp Feature: RT Description: RVT_N Location: 250267-250504 bp Feature: RT Description: RVT_N Location: 25 0267-25 05 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250555-251203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 05 5 5 -25 1203 bp Feature: domain Description: GIIM Note: maturase Location: 251260-251491 bp Feature: domain Description: GIIM Note: maturase Location: 25 1260-25 1491 bp Feature: gene Location: 251950-252123 bp Feature: gene Location: 252147-252356 bp Feature: gene Location: 257530-258693 bp Feature: domain Description: YWFCY Location: 257536-257713 bp Feature: domain Description: YWFCY Location: 25 75 36-25 7713 bp Feature: gene Location: 258987-259214 bp Feature: gene Location: 259220-261037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259487-260309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 9487-260309 bp Feature: domain Description: Intron_maturas2 Location: 260453-260687 bp Feature: domain Description: Intron_maturas2 Location: 26045 3-260687 bp Feature: domain Description: HNHc Note: nucleases Location: 260858-261008 bp Feature: domain Description: HNHc Note: nucleases Location: 26085 8-261008 bp Feature: gene Location: 261001-262005 bp Feature: domain Description: TraG-D_C Location: 261379-261712 bp Feature: domain Description: TraG-D_C Location: 261379-261712 bp Feature: gene Location: 262160-262441 bp Feature: domain Description: Imm17 Location: 262250-262427 bp Feature: domain Description: Imm17 Location: 26225 0-262427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), Imm17 (pfam15562)

Seq: VVYP01000007.1 Bacteroides caccae strain BIOML-A31 scaffold7_size185888, whole genome shotgun sequence (185888 bp)
Overview 1 RT 1: 152444-158848 bp Neighborhood of RT #1 [152444, 158848] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 152444-153511 bp Feature: domain Description: AAA_25 Location: 152579-153041 bp Feature: domain Description: AAA_25 Location: 152579-153041 bp Feature: gene Location: 153723-153905 bp Feature: gene Location: 154453-156261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154717-155539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154717-155539 bp Feature: domain Description: Intron_maturas2 Location: 155608-155917 bp Feature: domain Description: Intron_maturas2 Location: 1556 08-155917 bp Feature: gene Location: 156251-157162 bp Feature: domain Description: Toprim_2 Location: 156785-157073 bp Feature: domain Description: Toprim_2 Location: 156 785-157073 bp Feature: gene Location: 157445-158848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)