myRT

myRT report for GCA_008572365.1_ASM857236v1

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Seq: VVYO01000035.1 Bacteroides caccae strain BIOML-A30 scaffold35_size43497, whole genome shotgun sequence (43497 bp)
Overview 1 RT 1: 31890-35823 bp Neighborhood of RT #1 [31890, 35823] KOG1378 RVT-GII Feature: gene Location: 31890-33059 bp Ori: KAA5447069.1 Feature: domain Description: KOG1378 Location: 32001-32913 bp Feature: domain Description: KOG1 378 Location: 32001 -3291 3 bp Feature: gene Location: 33409-33654 bp Feature: gene Location: 33944-35298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34280-34436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34280-34436 bp Feature: gene Location: 35224-35481 bp Feature: gene Location: 35617-35823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1378 (KOG1378, Purple acid phosphatase ), RVT-GII

Seq: VVYO01000007.1 Bacteroides caccae strain BIOML-A30 scaffold7_size184772, whole genome shotgun sequence (184772 bp)
Overview 1 RT 1: 85922-99732 bp Neighborhood of RT #1 [85922, 99848] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 85922-88111 bp Ori: KAA5450801.1 Feature: domain Description: GlnA3 Location: 85994-88109 bp Feature: domain Description: GlnA3 Location: 85994-88109 bp Feature: gene Location: 88497-90659 bp Feature: gene Location: 90862-91992 bp Ori: KAA5450802.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91183-91735 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91183-91735 bp Feature: gene Location: 91989-97955 bp Ori: KAA5450803.1 Feature: domain Description: DUF4011 Location: 93219-93732 bp Feature: domain Description: DUF4011 Location: 932 19-93732 bp Feature: domain Description: DEXXQc_SF1 Location: 94071-94680 bp Feature: domain Description: DEXXQc_SF1 Location: 94071-94680 bp Feature: domain Description: DEXXQc_SF1 Location: 95316-96258 bp Feature: domain Description: DEXXQc_SF1 Location: 95316-962 58 bp Feature: domain Description: TIGR00376 Location: 96390-96780 bp Feature: domain Description: TIGR00376 Location: 96390-96780 bp Feature: domain Description: MTES_1575 Location: 96930-97215 bp Feature: domain Description: MTES_1575 Location: 96930-972 15 bp Feature: domain Description: DUF3320 Location: 97464-97605 bp Feature: domain Description: DUF332 0 Location: 97464-97605 bp Feature: gene Location: 98052-99848 bp Ori: KAA5450804.1 Feature: domain Description: rpsA Location: 98118-99732 bp Feature: domain Description: rpsA Location: 98118-99732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VVYO01000017.1 Bacteroides caccae strain BIOML-A30 scaffold17_size172403, whole genome shotgun sequence (172403 bp)
Overview 1 RT 1: 6455-11808 bp Neighborhood of RT #1 [6455, 15929] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 6455-6697 bp Feature: gene Location: 6879-7364 bp Feature: gene Location: 7361-8665 bp Ori: KAA5448634.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7574-8168 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7574-8168 bp Feature: gene Location: 8754-9036 bp Feature: gene Location: 9183-15929 bp Ori: KAA5448488.1 Feature: domain Description: Laminin_G_3 Location: 10647-10740 bp Feature: domain Description: Laminin_G_3 Location: 10647-10740 bp Feature: domain Description: Laminin_G_3 Location: 11385-11808 bp Feature: domain Description: Laminin_G_3 Location: 113 85-11808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VVYO01000003.1 Bacteroides caccae strain BIOML-A30 scaffold3_size422250, whole genome shotgun sequence (422250 bp)
Overview 1 RT 1: 238271-243763 bp Neighborhood of RT #1 [238271, 243804] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 238271-238585 bp Ori: KAA5452424.1 Feature: domain Description: DUF3876 Location: 238325-238574 bp Feature: domain Description: DUF3876 Location: 238325-238574 bp Feature: gene Location: 238600-240306 bp Ori: KAA5452425.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 238732-240298 bp Feature: domain Description: Bac_Flav_CT_G Location: 238732-24 0298 bp Feature: gene Location: 240291-242000 bp Ori: KAA5452426.1 Gene: ltrA Feature: domain Description: RVT_N Location: 240393-240636 bp Feature: domain Description: RVT_N Location: 24 0393-24 0636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240681-241329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 0681-24 1329 bp Feature: domain Description: GIIM Note: maturase Location: 241383-241614 bp Feature: domain Description: GIIM Note: maturase Location: 24 1383-24 1614 bp Feature: gene Location: 242552-243472 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 242555-243473 bp Feature: domain Description: Bac_Flav_CT_G Location: 24 2555-24 34 73 bp Feature: gene Location: 243469-243804 bp Ori: KAA5452427.1 Feature: domain Description: DUF4133 Location: 243496-243763 bp Feature: domain Description: DUF4 133 Location: 24 34 96-24 3763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VVYO01000016.1 Bacteroides caccae strain BIOML-A30 scaffold16_size116976, whole genome shotgun sequence (116976 bp)
Overview 1 RT 1: 86684-90617 bp Neighborhood of RT #1 [86684, 90617] RVT-UG27 Feature: gene Location: 86684-87331 bp Feature: gene Location: 87345-88013 bp Feature: gene Location: 88006-89268 bp Ori: KAA5448818.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 88198-88834 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 88198-88834 bp Feature: gene Location: 89591-90088 bp Feature: gene Location: 90138-90617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27