myRT

myRT report for GCA_008572405.1_ASM857240v1

Download annotations/find similar RTs

Seq: VVYN01000054.1 Bacteroides caccae strain BIOML-A29 scaffold54_size15684, whole genome shotgun sequence (15684 bp)
Overview 1 RT 1: 6455-15684 bp Neighborhood of RT #1 [6455, 15684] RVT-DGRs Feature: gene Location: 6455-6697 bp Feature: gene Location: 6879-7364 bp Feature: gene Location: 7361-8665 bp Ori: KAA5447886.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7574-8168 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7574-81 68 bp Feature: gene Location: 8754-9036 bp Feature: gene Location: 9183-15684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYN01000006.1 Bacteroides caccae strain BIOML-A29 scaffold6_size184772, whole genome shotgun sequence (184772 bp)
Overview 1 RT 1: 84925-98849 bp Neighborhood of RT #1 [84925, 98851] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons GlnA3 Feature: gene Location: 84925-86721 bp Ori: KAA5454450.1 Feature: domain Description: rpsA Location: 84991-86605 bp Feature: domain Description: rpsA Location: 84991-86605 bp Feature: gene Location: 86818-92784 bp Ori: KAA5454451.1 Feature: domain Description: DUF4011 Location: 88048-88561 bp Feature: domain Description: DUF4011 Location: 88048-88561 bp Feature: domain Description: DEXXQc_SF1 Location: 88900-89509 bp Feature: domain Description: DEXXQc_SF1 Location: 88900-89509 bp Feature: domain Description: DEXXQc_SF1 Location: 90145-91087 bp Feature: domain Description: DEXXQc_SF1 Location: 90145-91087 bp Feature: domain Description: TIGR00376 Location: 91219-91609 bp Feature: domain Description: TIGR00376 Location: 912 19-91609 bp Feature: domain Description: MTES_1575 Location: 91759-92044 bp Feature: domain Description: MTES_1575 Location: 91759-92 044 bp Feature: domain Description: DUF3320 Location: 92293-92434 bp Feature: domain Description: DUF332 0 Location: 92 2 93-92 434 bp Feature: gene Location: 92781-93911 bp Ori: KAA5454452.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93102-93654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93102 -93654 bp Feature: gene Location: 94114-96276 bp Feature: gene Location: 96662-98851 bp Ori: KAA5454453.1 Feature: domain Description: GlnA3 Location: 96734-98849 bp Feature: domain Description: GlnA3 Location: 96734-98849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, GlnA3 (COG3968)

Seq: VVYN01000040.1 Bacteroides caccae strain BIOML-A29 scaffold40_size36956, whole genome shotgun sequence (36956 bp)
Overview 1 RT 1: 26360-30293 bp Neighborhood of RT #1 [26360, 30293] RVT-UG27 Feature: gene Location: 26360-26839 bp Feature: gene Location: 26889-27386 bp Feature: gene Location: 27709-28971 bp Ori: KAA5448970.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 27901-28537 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 27901-2853 7 bp Feature: gene Location: 28964-29632 bp Feature: gene Location: 29646-30293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VVYN01000038.1 Bacteroides caccae strain BIOML-A29 scaffold38_size46698, whole genome shotgun sequence (46698 bp)
Overview 1 RT 1: 35035-38968 bp Neighborhood of RT #1 [35035, 38968] KOG1378 RVT-GII Feature: gene Location: 35035-36204 bp Ori: KAA5449181.1 Feature: domain Description: KOG1378 Location: 35146-36058 bp Feature: domain Description: KOG1378 Location: 3514 6-36058 bp Feature: gene Location: 36554-36799 bp Feature: gene Location: 37089-38443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37425-37581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374 25-37581 bp Feature: gene Location: 38369-38626 bp Feature: gene Location: 38762-38968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1378 (KOG1378, Purple acid phosphatase ), RVT-GII

Seq: VVYN01000004.1 Bacteroides caccae strain BIOML-A29 scaffold4_size190176, whole genome shotgun sequence (190176 bp)
Overview 1 RT 1: 178447-183969 bp Neighborhood of RT #1 [178447, 183980] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 178447-178782 bp Ori: KAA5454879.1 Feature: domain Description: DUF4133 Location: 178474-178741 bp Feature: domain Description: DUF4133 Location: 178474-178741 bp Feature: gene Location: 178779-179699 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 178782-179700 bp Feature: domain Description: Bac_Flav_CT_G Location: 178782-179700 bp Feature: gene Location: 180251-181960 bp Ori: KAA5454880.1 Gene: ltrA Feature: domain Description: RVT_N Location: 180353-180596 bp Feature: domain Description: RVT_N Location: 18035 3-1805 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180641-181289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180641-181289 bp Feature: domain Description: GIIM Note: maturase Location: 181343-181574 bp Feature: domain Description: GIIM Note: maturase Location: 181343-1815 74 bp Feature: gene Location: 181945-183651 bp Ori: KAA5454881.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 182077-183643 bp Feature: domain Description: Bac_Flav_CT_G Location: 182077-183643 bp Feature: gene Location: 183666-183980 bp Ori: KAA5454882.1 Feature: domain Description: DUF3876 Location: 183720-183969 bp Feature: domain Description: DUF3876 Location: 183720-183969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)