myRT

myRT report for GCA_008572425.1_ASM857242v1

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Seq: VVYM01000026.1 Bacteroides caccae strain BIOML-A28 scaffold26_size55125, whole genome shotgun sequence (55125 bp)
Overview 1 RT 1: 39175-48649 bp Neighborhood of RT #1 [39175, 48649] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 39175-45921 bp Ori: KAA5456190.1 Feature: domain Description: Laminin_G_3 Location: 40639-40732 bp Feature: domain Description: Laminin_G_3 Location: 40639-40732 bp Feature: domain Description: Laminin_G_3 Location: 41377-41800 bp Feature: domain Description: Laminin_G_3 Location: 41 377-41 800 bp Feature: gene Location: 46068-46350 bp Feature: gene Location: 46439-47743 bp Ori: KAA5456198.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46652-47246 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46652-47246 bp Feature: gene Location: 47740-48225 bp Feature: gene Location: 48407-48649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: VVYM01000011.1 Bacteroides caccae strain BIOML-A28 scaffold11_size177409, whole genome shotgun sequence (177409 bp)
Overview 1 RT 1: 28134-32067 bp Neighborhood of RT #1 [28134, 32067] RVT-UG27 Feature: gene Location: 28134-28613 bp Feature: gene Location: 28663-29160 bp Feature: gene Location: 29483-30745 bp Ori: KAA5457839.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 29675-30311 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 2 9675-30311 bp Feature: gene Location: 30738-31406 bp Feature: gene Location: 31420-32067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VVYM01000014.1 Bacteroides caccae strain BIOML-A28 scaffold14_size151055, whole genome shotgun sequence (151055 bp)
Overview 1 RT 1: 38878-42811 bp Neighborhood of RT #1 [38878, 42811] KOG1378 RVT-GII Feature: gene Location: 38878-40047 bp Ori: KAA5457396.1 Feature: domain Description: KOG1378 Location: 38989-39901 bp Feature: domain Description: KOG13 78 Location: 3 8989-3 9901 bp Feature: gene Location: 40397-40642 bp Feature: gene Location: 40932-42286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41268-41424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41268-41424 bp Feature: gene Location: 42212-42469 bp Feature: gene Location: 42605-42811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1378 (KOG1378, Purple acid phosphatase ), RVT-GII

Seq: VVYM01000007.1 Bacteroides caccae strain BIOML-A28 scaffold7_size209688, whole genome shotgun sequence (209688 bp)
Overview 1 RT 1: 25687-31179 bp Neighborhood of RT #1 [25687, 31220] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 25687-26001 bp Ori: KAA5458845.1 Feature: domain Description: DUF3876 Location: 25741-25990 bp Feature: domain Description: DUF3876 Location: 2574 1-25990 bp Feature: gene Location: 26016-27722 bp Ori: KAA5458846.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 26148-27714 bp Feature: domain Description: Bac_Flav_CT_G Location: 2614 8-27714 bp Feature: gene Location: 27707-29416 bp Ori: KAA5458847.1 Gene: ltrA Feature: domain Description: RVT_N Location: 27809-28052 bp Feature: domain Description: RVT_N Location: 27809-28052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28097-28745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28097-2874 5 bp Feature: domain Description: GIIM Note: maturase Location: 28799-29030 bp Feature: domain Description: GIIM Note: maturase Location: 28799-29030 bp Feature: gene Location: 29968-30888 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 29971-30889 bp Feature: domain Description: Bac_Flav_CT_G Location: 29971-30889 bp Feature: gene Location: 30885-31220 bp Ori: KAA5458848.1 Feature: domain Description: DUF4133 Location: 30912-31179 bp Feature: domain Description: DUF4 133 Location: 30912-31179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VVYM01000003.1 Bacteroides caccae strain BIOML-A28 scaffold3_size550248, whole genome shotgun sequence (550248 bp)
Overview 1 RT 1: 85944-99754 bp Neighborhood of RT #1 [85944, 99870] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 85944-88133 bp Ori: KAA5460532.1 Feature: domain Description: GlnA3 Location: 86016-88131 bp Feature: domain Description: GlnA3 Location: 86016-88131 bp Feature: gene Location: 88519-90681 bp Feature: gene Location: 90884-92014 bp Ori: KAA5460533.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91205-91757 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91205 -9175 7 bp Feature: gene Location: 92011-97977 bp Ori: KAA5460534.1 Feature: domain Description: DUF4011 Location: 93241-93754 bp Feature: domain Description: DUF4011 Location: 93241-9375 4 bp Feature: domain Description: DEXXQc_SF1 Location: 94093-94702 bp Feature: domain Description: DEXXQc_SF1 Location: 94093-94702 bp Feature: domain Description: DEXXQc_SF1 Location: 95338-96280 bp Feature: domain Description: DEXXQc_SF1 Location: 95 338-96280 bp Feature: domain Description: TIGR00376 Location: 96412-96802 bp Feature: domain Description: TIGR00376 Location: 96412-96802 bp Feature: domain Description: MTES_1575 Location: 96952-97237 bp Feature: domain Description: MTES_15 75 Location: 9695 2-97237 bp Feature: domain Description: DUF3320 Location: 97486-97627 bp Feature: domain Description: DUF3320 Location: 97486-97627 bp Feature: gene Location: 98074-99870 bp Ori: KAA5460535.1 Feature: domain Description: rpsA Location: 98140-99754 bp Feature: domain Description: rpsA Location: 98140-9975 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)