myRT

myRT report for GCA_008572445.1_ASM857244v1

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Seq: VVYL01000007.1 Bacteroides caccae strain BIOML-A27 scaffold7_size209719, whole genome shotgun sequence (209719 bp)
Overview 1 RT 1: 25718-31210 bp Neighborhood of RT #1 [25718, 31251] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 25718-26032 bp Ori: KAA5473226.1 Feature: domain Description: DUF3876 Location: 25772-26021 bp Feature: domain Description: DUF3876 Location: 25772-26021 bp Feature: gene Location: 26047-27753 bp Ori: KAA5473227.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 26179-27745 bp Feature: domain Description: Bac_Flav_CT_G Location: 261 79-27745 bp Feature: gene Location: 27738-29447 bp Ori: KAA5473228.1 Gene: ltrA Feature: domain Description: RVT_N Location: 27840-28083 bp Feature: domain Description: RVT_N Location: 27840-28083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28128-28776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 28-28776 bp Feature: domain Description: GIIM Note: maturase Location: 28830-29061 bp Feature: domain Description: GIIM Note: maturase Location: 28830-29061 bp Feature: gene Location: 29999-30919 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 30002-30920 bp Feature: domain Description: Bac_Flav_CT_G Location: 30002-30920 bp Feature: gene Location: 30916-31251 bp Ori: KAA5473229.1 Feature: domain Description: DUF4133 Location: 30943-31210 bp Feature: domain Description: DUF41 33 Location: 30943-31 21 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: VVYL01000013.1 Bacteroides caccae strain BIOML-A27 scaffold13_size151086, whole genome shotgun sequence (151086 bp)
Overview 1 RT 1: 38909-42842 bp Neighborhood of RT #1 [38909, 42842] KOG1378 RVT-GII Feature: gene Location: 38909-40078 bp Ori: KAA5471448.1 Feature: domain Description: KOG1378 Location: 39020-39932 bp Feature: domain Description: KOG1378 Location: 3902 0-39932 bp Feature: gene Location: 40428-40673 bp Feature: gene Location: 40963-42317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41299-41455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 99-41455 bp Feature: gene Location: 42243-42500 bp Feature: gene Location: 42636-42842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1378 (KOG1378, Purple acid phosphatase ), RVT-GII

Seq: VVYL01000028.1 Bacteroides caccae strain BIOML-A27 scaffold28_size55125, whole genome shotgun sequence (55125 bp)
Overview 1 RT 1: 39175-48649 bp Neighborhood of RT #1 [39175, 48649] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 39175-45921 bp Ori: KAA5468633.1 Feature: domain Description: Laminin_G_3 Location: 40639-40732 bp Feature: domain Description: Laminin_G_3 Location: 4063 9-4073 2 bp Feature: domain Description: Laminin_G_3 Location: 41377-41800 bp Feature: domain Description: Laminin_G_3 Location: 413 77-41800 bp Feature: gene Location: 46068-46350 bp Feature: gene Location: 46439-47743 bp Ori: KAA5468641.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46652-47246 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46652-47246 bp Feature: gene Location: 47740-48225 bp Feature: gene Location: 48407-48649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: VVYL01000002.1 Bacteroides caccae strain BIOML-A27 scaffold2_size550176, whole genome shotgun sequence (550176 bp)
Overview 1 RT 1: 85944-99754 bp Neighborhood of RT #1 [85944, 99870] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 85944-88133 bp Ori: KAA5475369.1 Feature: domain Description: GlnA3 Location: 86016-88131 bp Feature: domain Description: GlnA3 Location: 86016-88131 bp Feature: gene Location: 88519-90681 bp Feature: gene Location: 90884-92014 bp Ori: KAA5475370.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91205-91757 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91205-91757 bp Feature: gene Location: 92011-97977 bp Ori: KAA5475371.1 Feature: domain Description: DUF4011 Location: 93241-93754 bp Feature: domain Description: DUF4 011 Location: 9324 1-93754 bp Feature: domain Description: DEXXQc_SF1 Location: 94093-94702 bp Feature: domain Description: DEXXQc_SF1 Location: 94 093-94 702 bp Feature: domain Description: DEXXQc_SF1 Location: 95338-96280 bp Feature: domain Description: DEXXQc_SF1 Location: 95338-96280 bp Feature: domain Description: TIGR00376 Location: 96412-96802 bp Feature: domain Description: TIGR00376 Location: 964 12-96802 bp Feature: domain Description: MTES_1575 Location: 96952-97237 bp Feature: domain Description: MTES_1575 Location: 96952-97237 bp Feature: domain Description: DUF3320 Location: 97486-97627 bp Feature: domain Description: DUF3320 Location: 974 86-97627 bp Feature: gene Location: 98074-99870 bp Ori: KAA5475372.1 Feature: domain Description: rpsA Location: 98140-99754 bp Feature: domain Description: rpsA Location: 9814 0-99754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)