myRT

myRT report for GCA_008572485.1_ASM857248v1

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Seq: VVYJ01000001.1 Bacteroides caccae strain BIOML-A25 scaffold1_size716075, whole genome shotgun sequence (716075 bp)
Overview 1 RT 1: 28129-32062 bp Neighborhood of RT #1 [28129, 32062] RVT-UG27 Feature: gene Location: 28129-28608 bp Feature: gene Location: 28658-29155 bp Feature: gene Location: 29478-30740 bp Ori: KAA5481111.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 29670-30306 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 29670-30306 bp Feature: gene Location: 30733-31401 bp Feature: gene Location: 31415-32062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VVYJ01000007.1 Bacteroides caccae strain BIOML-A25 scaffold7_size235103, whole genome shotgun sequence (235103 bp)
Overview 1 RT 1: 148231-150945 bp 2 RT 2: 206564-220497 bp Neighborhood of RT #1 [148231, 150945] RVT-DGRs Neighborhood of RT #2 [206564, 220499] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons GlnA3 Feature: gene Location: 148231-148473 bp Feature: gene Location: 148652-149137 bp Feature: gene Location: 149134-150438 bp Ori: KAA5475926.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149350-149944 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149350-149944 bp Feature: gene Location: 150508-150754 bp Feature: gene Location: 150751-150945 bp Feature: gene Location: 206564-208360 bp Ori: KAA5475983.1 Feature: domain Description: rpsA Location: 206630-208244 bp Feature: domain Description: rpsA Location: 2 06630-2 082 44 bp Feature: gene Location: 208457-214423 bp Ori: KAA5475984.1 Feature: domain Description: DUF4011 Location: 209687-210200 bp Feature: domain Description: DUF4011 Location: 2 09687-2 102 00 bp Feature: domain Description: DEXXQc_SF1 Location: 210539-211154 bp Feature: domain Description: DEXXQc_SF1 Location: 2 10539-2 11154 bp Feature: domain Description: DEXXQc_SF1 Location: 211784-212726 bp Feature: domain Description: DEXXQc_SF1 Location: 2 11784-2 12 72 6 bp Feature: domain Description: TIGR00376 Location: 212858-213248 bp Feature: domain Description: TIGR00376 Location: 2 12 858-2 132 48 bp Feature: domain Description: MTES_1575 Location: 213398-213683 bp Feature: domain Description: MTES_1575 Location: 2 13398-2 13683 bp Feature: domain Description: DUF3320 Location: 213932-214073 bp Feature: domain Description: DUF332 0 Location: 2 13932 -2 14073 bp Feature: gene Location: 214420-215550 bp Ori: KAA5475985.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214741-215293 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 14741-2 152 93 bp Feature: gene Location: 215753-217915 bp Feature: gene Location: 218310-220499 bp Ori: KAA5475986.1 Feature: domain Description: GlnA3 Location: 218382-220497 bp Feature: domain Description: GlnA3 Location: 2 18382 -2 2 0497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, GlnA3 (COG3968)

Seq: VVYJ01000003.1 Bacteroides caccae strain BIOML-A25 scaffold3_size475306, whole genome shotgun sequence (475306 bp)
Overview 1 RT 1: 68154-71533 bp Neighborhood of RT #1 [68154, 71533] RVT-DGRs Feature: gene Location: 68154-69473 bp Feature: gene Location: 69728-69928 bp Feature: gene Location: 69990-70805 bp Ori: KAA5478620.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70323-70647 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 703 23 -70647 bp Feature: gene Location: 70771-71001 bp Feature: gene Location: 71186-71533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYJ01000002.1 Bacteroides caccae strain BIOML-A25 scaffold2_size707419, whole genome shotgun sequence (707419 bp)
Overview 1 RT 1: 65983-70968 bp 2 RT 2: 137707-141946 bp 3 RT 3: 667483-670909 bp Neighborhood of RT #1 [65983, 70973] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Neighborhood of RT #2 [137707, 141981] Mfa_like_1 DUF1566 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Neighborhood of RT #3 [667483, 670923] TraO DUF3872 RVT-AbiP2 DUF3873 Feature: gene Location: 65983-66156 bp Ori: KAA5479658.1 Feature: domain Description: Bac_Flav_CT_G Location: 65986-66142 bp Feature: domain Description: Bac_Flav_CT_G Location: 65986-6614 2 bp Feature: gene Location: 66163-66441 bp Ori: KAA5479659.1 Feature: domain Description: Bac_Flav_CT_G Location: 66181-66439 bp Feature: domain Description: Bac_Flav_CT_G Location: 66181-664 39 bp Feature: gene Location: 66519-68330 bp Ori: KAA5479660.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66783-67605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66783-67605 bp Feature: domain Description: Intron_maturas2 Location: 67680-67995 bp Feature: domain Description: Intron_maturas2 Location: 67680-67995 bp Feature: domain Description: HNHc Note: nucleases Location: 68151-68301 bp Feature: domain Description: HNHc Note: nucleases Location: 68151-68301 bp Feature: gene Location: 68877-70784 bp Ori: KAA5479661.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 68880-70770 bp Feature: domain Description: Bac_Flav_CT_G Location: 68880-70770 bp Feature: gene Location: 70803-70973 bp Ori: KAA5479662.1 Feature: domain Description: DUF3875 Location: 70812-70968 bp Feature: domain Description: DUF3875 Location: 70812-70968 bp Feature: gene Location: 137707-138987 bp Ori: KAA5479718.1 Feature: domain Description: Mfa_like_1 Location: 137779-138190 bp Feature: domain Description: Mfa_like_1 Location: 137779-138190 bp Feature: domain Description: DUF1566 Location: 138676-138976 bp Feature: domain Description: DUF1566 Location: 138676-138976 bp Feature: gene Location: 139324-139614 bp Ori: KAA5479719.1 Feature: domain Description: HTH_28 Location: 139348-139492 bp Feature: domain Description: HTH_28 Location: 13934 8-1394 92 bp Feature: gene Location: 139735-139932 bp Ori: KAA5479720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139738-139930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139738-139930 bp Feature: gene Location: 139910-140287 bp Ori: KAA5479721.1 Feature: domain Description: RVT_N Location: 139913-140138 bp Feature: domain Description: RVT_N Location: 139913-14 0138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140192-140261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 0192-14 0261 bp Feature: gene Location: 140274-140537 bp Feature: gene Location: 141232-141981 bp Ori: KAA5480158.1 Feature: domain Description: GDPD_like_2 Location: 141289-141946 bp Feature: domain Description: GDPD_like_2 Location: 14 1289-14 194 6 bp Feature: gene Location: 667483-668067 bp Ori: KAA5480117.1 Feature: domain Description: TraO Location: 667564-668062 bp Feature: domain Description: TraO Location: 667564 -668062 bp Feature: gene Location: 668083-668523 bp Ori: KAA5480118.1 Feature: domain Description: DUF3872 Location: 668113-668506 bp Feature: domain Description: DUF3872 Location: 668113-668506 bp Feature: gene Location: 668574-670079 bp Ori: KAA5480119.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 669003-669459 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 669003-6694 59 bp Feature: gene Location: 670207-670689 bp Feature: gene Location: 670705-670923 bp Ori: KAA5480121.1 Feature: domain Description: DUF3873 Location: 670714-670909 bp Feature: domain Description: DUF3873 Location: 670714 -670909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991), Mfa_like_1 (pfam13149), DUF1566 (pfam07603), HTH_28 (pfam13518), RVT_N (pfam13655), GDPD_like_2 (cd08582)
TraO (pfam10626), DUF3872 (pfam12988), RVT-AbiP2, DUF3873 (pfam12989)

Seq: VVYJ01000006.1 Bacteroides caccae strain BIOML-A25 scaffold6_size330915, whole genome shotgun sequence (330915 bp)
Overview 1 RT 1: 118147-123671 bp Neighborhood of RT #1 [118147, 123682] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 118147-118482 bp Ori: KAA5476659.1 Feature: domain Description: DUF4133 Location: 118174-118441 bp Feature: domain Description: DUF4133 Location: 118174-118441 bp Feature: gene Location: 118479-119399 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 118482-119400 bp Feature: domain Description: Bac_Flav_CT_G Location: 118482-119400 bp Feature: gene Location: 119953-121662 bp Ori: KAA5476660.1 Gene: ltrA Feature: domain Description: RVT_N Location: 120055-120298 bp Feature: domain Description: RVT_N Location: 12005 5 -120298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120343-120991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120343-120991 bp Feature: domain Description: GIIM Note: maturase Location: 121045-121276 bp Feature: domain Description: GIIM Note: maturase Location: 121045 -121276 bp Feature: gene Location: 121647-123353 bp Ori: KAA5476661.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 121779-123345 bp Feature: domain Description: Bac_Flav_CT_G Location: 121779-123345 bp Feature: gene Location: 123368-123682 bp Ori: KAA5476662.1 Feature: domain Description: DUF3876 Location: 123422-123671 bp Feature: domain Description: DUF3876 Location: 123422-123671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)