myRT

myRT report for GCA_008572505.1_ASM857250v1

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Seq: VVYI01000015.1 Bacteroides caccae strain BIOML-A24 scaffold15_size99524, whole genome shotgun sequence (99524 bp)
Overview 1 RT 1: 20944-25207 bp 2 RT 2: 91952-96928 bp Neighborhood of RT #1 [20944, 25218] GDPD_like_2 RVT_N RVT-GII RVT-GII HTH_28 Mfa_like_1 DUF1566 Neighborhood of RT #2 [91952, 96942] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 20944-21693 bp Ori: KAA5484654.1 Feature: domain Description: GDPD_like_2 Location: 21001-21658 bp Feature: domain Description: GDPD_like_2 Location: 21 001 -21 658 bp Feature: gene Location: 22388-22651 bp Feature: gene Location: 22638-23015 bp Ori: KAA5484588.1 Feature: domain Description: RVT_N Location: 22641-22866 bp Feature: domain Description: RVT_N Location: 22641 -22866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22920-22989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22920-22989 bp Feature: gene Location: 22993-23190 bp Ori: KAA5484589.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22996-23188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22996-231 88 bp Feature: gene Location: 23311-23601 bp Ori: KAA5484590.1 Feature: domain Description: HTH_28 Location: 23335-23479 bp Feature: domain Description: HTH_28 Location: 23335-23479 bp Feature: gene Location: 23938-25218 bp Ori: KAA5484591.1 Feature: domain Description: Mfa_like_1 Location: 24010-24421 bp Feature: domain Description: Mfa_like_1 Location: 2401 0-24421 bp Feature: domain Description: DUF1566 Location: 24907-25207 bp Feature: domain Description: DUF1 566 Location: 24907-25207 bp Feature: gene Location: 91952-92122 bp Ori: KAA5484646.1 Feature: domain Description: DUF3875 Location: 91961-92117 bp Feature: domain Description: DUF3875 Location: 91 961 -921 1 7 bp Feature: gene Location: 92141-94048 bp Ori: KAA5484647.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 92144-94034 bp Feature: domain Description: Bac_Flav_CT_G Location: 921 44-94034 bp Feature: gene Location: 94595-96406 bp Ori: KAA5484648.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94859-95681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94859-95681 bp Feature: domain Description: Intron_maturas2 Location: 95756-96071 bp Feature: domain Description: Intron_maturas2 Location: 95756-96071 bp Feature: domain Description: HNHc Note: nucleases Location: 96227-96377 bp Feature: domain Description: HNHc Note: nucleases Location: 96227-96377 bp Feature: gene Location: 96484-96762 bp Ori: KAA5484649.1 Feature: domain Description: Bac_Flav_CT_G Location: 96502-96760 bp Feature: domain Description: Bac_Flav_CT_G Location: 96502-96760 bp Feature: gene Location: 96769-96942 bp Ori: KAA5484650.1 Feature: domain Description: Bac_Flav_CT_G Location: 96772-96928 bp Feature: domain Description: Bac_Flav_CT_G Location: 96772-96928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDPD_like_2 (cd08582), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518), Mfa_like_1 (pfam13149), DUF1566 (pfam07603), DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VVYI01000039.1 Bacteroides caccae strain BIOML-A24 scaffold39_size29343, whole genome shotgun sequence (29343 bp)
Overview 1 RT 1: 6378-9092 bp Neighborhood of RT #1 [6378, 9092] RVT-DGRs Feature: gene Location: 6378-6572 bp Feature: gene Location: 6569-6815 bp Feature: gene Location: 6885-8189 bp Ori: KAA5480392.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7101-7695 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7101-7695 bp Feature: gene Location: 8186-8671 bp Feature: gene Location: 8850-9092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYI01000036.1 Bacteroides caccae strain BIOML-A24 scaffold36_size41112, whole genome shotgun sequence (41112 bp)
Overview 1 RT 1: 36497-39932 bp Neighborhood of RT #1 [36497, 39937] DUF3873 RVT-AbiP2 DUF3872 TraO Feature: gene Location: 36497-36715 bp Ori: KAA5480490.1 Feature: domain Description: DUF3873 Location: 36506-36701 bp Feature: domain Description: DUF3 873 Location: 3 6506-3 6701 bp Feature: gene Location: 36731-37213 bp Feature: gene Location: 37341-38846 bp Ori: KAA5480492.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 37770-38226 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 7770-3 8226 bp Feature: gene Location: 38897-39337 bp Ori: KAA5480493.1 Feature: domain Description: DUF3872 Location: 38927-39320 bp Feature: domain Description: DUF3 872 Location: 3 8927-3 93 20 bp Feature: gene Location: 39353-39937 bp Ori: KAA5480494.1 Feature: domain Description: TraO Location: 39434-39932 bp Feature: domain Description: TraO Location: 3 943 4-3 993 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3873 (pfam12989), RVT-AbiP2, DUF3872 (pfam12988), TraO (pfam10626)

Seq: VVYI01000001.1 Bacteroides caccae strain BIOML-A24 scaffold1_size715306, whole genome shotgun sequence (715306 bp)
Overview 1 RT 1: 27040-30973 bp Neighborhood of RT #1 [27040, 30973] RVT-UG27 Feature: gene Location: 27040-27519 bp Feature: gene Location: 27569-28066 bp Feature: gene Location: 28389-29651 bp Ori: KAA5489719.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 28581-29217 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 28581-29217 bp Feature: gene Location: 29644-30312 bp Feature: gene Location: 30326-30973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VVYI01000031.1 Bacteroides caccae strain BIOML-A24 scaffold31_size63561, whole genome shotgun sequence (63561 bp)
Overview 1 RT 1: 16153-21677 bp Neighborhood of RT #1 [16153, 21688] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 16153-16488 bp Ori: KAA5481664.1 Feature: domain Description: DUF4133 Location: 16180-16447 bp Feature: domain Description: DUF4133 Location: 16180-16447 bp Feature: gene Location: 16485-17405 bp Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 16488-17406 bp Feature: domain Description: Bac_Flav_CT_G Location: 16488-17406 bp Feature: gene Location: 17959-19668 bp Ori: KAA5481665.1 Gene: ltrA Feature: domain Description: RVT_N Location: 18061-18304 bp Feature: domain Description: RVT_N Location: 18061-18304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18349-18997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18349-18997 bp Feature: domain Description: GIIM Note: maturase Location: 19051-19282 bp Feature: domain Description: GIIM Note: maturase Location: 1905 1-19282 bp Feature: gene Location: 19665-21359 bp Ori: KAA5481666.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 19785-21351 bp Feature: domain Description: Bac_Flav_CT_G Location: 19785 -2135 1 bp Feature: gene Location: 21374-21688 bp Ori: KAA5481667.1 Feature: domain Description: DUF3876 Location: 21428-21677 bp Feature: domain Description: DUF3876 Location: 21428-21677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: VVYI01000002.1 Bacteroides caccae strain BIOML-A24 scaffold2_size449902, whole genome shotgun sequence (449902 bp)
Overview 1 RT 1: 340295-343674 bp Neighborhood of RT #1 [340295, 343674] RVT-DGRs Feature: gene Location: 340295-341614 bp Feature: gene Location: 341869-342069 bp Feature: gene Location: 342131-342946 bp Ori: KAA5488824.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 342464-342788 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34246 4-342788 bp Feature: gene Location: 342912-343142 bp Feature: gene Location: 343327-343674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYI01000022.1 Bacteroides caccae strain BIOML-A24 scaffold22_size77811, whole genome shotgun sequence (77811 bp)
Overview 1 RT 1: 49272-63205 bp Neighborhood of RT #1 [49272, 63207] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons GlnA3 Feature: gene Location: 49272-51068 bp Ori: KAA5482972.1 Feature: domain Description: rpsA Location: 49338-50952 bp Feature: domain Description: rpsA Location: 49338-50952 bp Feature: gene Location: 51165-57131 bp Ori: KAA5482973.1 Feature: domain Description: DUF4011 Location: 52395-52908 bp Feature: domain Description: DUF4011 Location: 52395-52908 bp Feature: domain Description: DEXXQc_SF1 Location: 53247-53862 bp Feature: domain Description: DEXXQc_SF1 Location: 53247 -53862 bp Feature: domain Description: DEXXQc_SF1 Location: 54492-55434 bp Feature: domain Description: DEXXQc_SF1 Location: 54492-55434 bp Feature: domain Description: TIGR00376 Location: 55566-55956 bp Feature: domain Description: TIGR0037 6 Location: 55566-55956 bp Feature: domain Description: MTES_1575 Location: 56106-56391 bp Feature: domain Description: MTES_157 5 Location: 56106-56391 bp Feature: domain Description: DUF3320 Location: 56640-56781 bp Feature: domain Description: DUF3320 Location: 56640-567 81 bp Feature: gene Location: 57128-58258 bp Ori: KAA5482974.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57449-58001 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57 449-58001 bp Feature: gene Location: 58461-60623 bp Feature: gene Location: 61018-63207 bp Ori: KAA5482975.1 Feature: domain Description: GlnA3 Location: 61090-63205 bp Feature: domain Description: GlnA3 Location: 61090-63205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, GlnA3 (COG3968)