myRT

myRT report for GCA_008572575.1_ASM857257v1

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Seq: VVYF01000006.1 Bacteroides caccae strain BIOML-A21 scaffold6_size240379, whole genome shotgun sequence (240379 bp)
Overview 1 RT 1: 33520-44866 bp Neighborhood of RT #1 [33520, 44904] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 33520-34686 bp Feature: gene Location: 34696-41484 bp Ori: KAA5493328.1 Feature: domain Description: Laminin_G_3 Location: 37132-37513 bp Feature: domain Description: Laminin_G_3 Location: 371 32-3751 3 bp Feature: domain Description: pfam08757 Location: 38308-38632 bp Feature: domain Description: pfam08757 Location: 38308-38632 bp Feature: domain Description: LRR_AMN1 Location: 39244-39688 bp Feature: domain Description: LRR_AMN1 Location: 39244-39688 bp Feature: gene Location: 41917-43212 bp Ori: KAA5493329.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42133-42724 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 421 33-42724 bp Feature: gene Location: 43214-43708 bp Feature: gene Location: 43759-44904 bp Ori: KAA5493331.1 Feature: domain Description: Arm-DNA-bind_5 Location: 43783-44029 bp Feature: domain Description: Arm-DNA-bind_5 Location: 43783-44029 bp Feature: domain Description: Phage_int_SAM_5 Location: 44068-44353 bp Feature: domain Description: Phage_int_SAM_5 Location: 44068-44353 bp Feature: domain Description: INTN1_C_like Location: 44392-44866 bp Feature: domain Description: INTN1 _C_like Location: 44392-44866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VVYF01000020.1 Bacteroides caccae strain BIOML-A21 scaffold20_size114049, whole genome shotgun sequence (114049 bp)
Overview 1 RT 1: 279-3007 bp Neighborhood of RT #1 [279, 3007] RVT-DGRs Feature: gene Location: 279-521 bp Feature: gene Location: 701-1186 bp Feature: gene Location: 1183-2487 bp Ori: KAA5488289.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1396-1990 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1396-1990 bp Feature: gene Location: 2582-2816 bp Feature: gene Location: 2813-3007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VVYF01000016.1 Bacteroides caccae strain BIOML-A21 scaffold16_size160174, whole genome shotgun sequence (160059 bp)
Overview 1 RT 1: 9137-22902 bp Neighborhood of RT #1 [9137, 23018] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 9137-11326 bp Ori: KAA5489545.1 Feature: domain Description: GlnA3 Location: 9209-11324 bp Feature: domain Description: GlnA3 Location: 9209-113 24 bp Feature: gene Location: 11667-13829 bp Feature: gene Location: 14032-15162 bp Ori: KAA5489546.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14353-14905 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 143 53 -14905 bp Feature: gene Location: 15159-21125 bp Ori: KAA5489547.1 Feature: domain Description: DUF4011 Location: 16389-16902 bp Feature: domain Description: DUF4011 Location: 163 89-16902 bp Feature: domain Description: DEXXQc_SF1 Location: 17241-17859 bp Feature: domain Description: DEXXQc_SF1 Location: 17241-17859 bp Feature: domain Description: DEXXQc_SF1 Location: 18486-19428 bp Feature: domain Description: DEXXQc_SF1 Location: 18486-19428 bp Feature: domain Description: TIGR00376 Location: 19560-19950 bp Feature: domain Description: TIGR003 76 Location: 19560-19950 bp Feature: domain Description: MTES_1575 Location: 20100-20385 bp Feature: domain Description: MTES_1575 Location: 20100-203 85 bp Feature: domain Description: DUF3320 Location: 20634-20775 bp Feature: domain Description: DUF3 3 20 Location: 2063 4-20775 bp Feature: gene Location: 21222-23018 bp Ori: KAA5489548.1 Feature: domain Description: rpsA Location: 21288-22902 bp Feature: domain Description: rpsA Location: 21288-22902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VVYF01000003.1 Bacteroides caccae strain BIOML-A21 scaffold3_size279172, whole genome shotgun sequence (279172 bp)
Overview 1 RT 1: 248820-252753 bp Neighborhood of RT #1 [248820, 252753] RVT-UG27 Feature: gene Location: 248820-249467 bp Feature: gene Location: 249481-250149 bp Feature: gene Location: 250142-251404 bp Ori: KAA5494738.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 250334-250970 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 250334 -250970 bp Feature: gene Location: 251727-252224 bp Feature: gene Location: 252274-252753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27