myRT

myRT report for GCA_008572595.1_ASM857259v1

Download annotations/find similar RTs

Seq: VVYE01000020.1 Bacteroides caccae strain BIOML-A20 scaffold20_size114049, whole genome shotgun sequence (114049 bp)
Overview 1 RT 1: 277-5602 bp Neighborhood of RT #1 [277, 9723] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 277-519 bp Feature: gene Location: 699-1184 bp Feature: gene Location: 1181-2485 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1394-1988 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 394-1 988 bp Feature: gene Location: 2580-2807 bp Feature: gene Location: 3004-9723 bp Feature: domain Description: Laminin_G_3 Location: 4447-4525 bp Feature: domain Description: Laminin_G_3 Location: 4447-4525 bp Feature: domain Description: Laminin_G_3 Location: 5176-5602 bp Feature: domain Description: Laminin_G_3 Location: 51 76-5602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: VVYE01000005.1 Bacteroides caccae strain BIOML-A20 scaffold5_size240458, whole genome shotgun sequence (240458 bp)
Overview 1 RT 1: 34695-44865 bp Neighborhood of RT #1 [34695, 44903] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 34695-41483 bp Feature: domain Description: Laminin_G_3 Location: 37131-37512 bp Feature: domain Description: Laminin_G_3 Location: 37131-37512 bp Feature: domain Description: pfam08757 Location: 38307-38631 bp Feature: domain Description: pfam08757 Location: 38307-38631 bp Feature: domain Description: LRR_AMN1 Location: 39243-39687 bp Feature: domain Description: LRR_AMN1 Location: 392 43-39687 bp Feature: gene Location: 41544-41711 bp Feature: gene Location: 41856-43211 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42132-42723 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42 132 -42 72 3 bp Feature: gene Location: 43213-43707 bp Feature: gene Location: 43758-44903 bp Feature: domain Description: Arm-DNA-bind_5 Location: 43782-44028 bp Feature: domain Description: Arm-DNA-bind_5 Location: 43782 -4402 8 bp Feature: domain Description: Phage_int_SAM_5 Location: 44067-44352 bp Feature: domain Description: Phage_int_SAM_5 Location: 44067-44352 bp Feature: domain Description: INTN1_C_like Location: 44391-44865 bp Feature: domain Description: INTN1_C_like Location: 44391-44865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: VVYE01000062.1 Bacteroides caccae strain BIOML-A20 scaffold62_size1737, whole genome shotgun sequence (1737 bp)
Overview 1 RT 1: 2-1675 bp Neighborhood of RT #1 [2, 1675] RVT-GII Feature: gene Location: 2-1123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-1088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-1088 bp Feature: gene Location: 1526-1675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VVYE01000006.1 Bacteroides caccae strain BIOML-A20 scaffold6_size226947, whole genome shotgun sequence (226947 bp)
Overview 1 RT 1: 196595-200528 bp Neighborhood of RT #1 [196595, 200528] RVT-UG27 Feature: gene Location: 196595-197242 bp Feature: gene Location: 197256-197924 bp Feature: gene Location: 197917-199179 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 198109-198745 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 198109-19874 5 bp Feature: gene Location: 199502-199999 bp Feature: gene Location: 200049-200528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27