myRT

myRT report for GCA_008629795.1_ASM862979v1

Download annotations/find similar RTs

Seq: VWQD01001001.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1006, whole genome shotgun sequence (661 bp)
Overview 1 RT 1: 2-629 bp Neighborhood of RT #1 [2, 658] RT_nLTR_like RVT-CRISPR-like Feature: gene Location: 2-169 bp Feature: domain Description: RT_nLTR_like Location: 38-161 bp Feature: domain Description: RT_nLTR_like Location: 38-1 61 bp Feature: gene Location: 263-658 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 281-629 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 281 -629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_nLTR_like (cd01650), RVT-CRISPR

Seq: VWQD01001059.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1064, whole genome shotgun sequence (456 bp)
Overview 1 RT 1: 1-286 bp Neighborhood of RT #1 [1, 453] RVT-CRISPR-like Feature: gene Location: 1-453 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 40-286 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 40-2 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01001080.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1085, whole genome shotgun sequence (548 bp)
Overview 1 RT 1: 1-524 bp Neighborhood of RT #1 [1, 547] RVT-CRISPR-like Feature: gene Location: 1-339 bp Feature: gene Location: 356-547 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 386-524 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3 86-524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000011.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_11, whole genome shotgun sequence (810170 bp)
Overview 1 RT 1: 481472-487331 bp Neighborhood of RT #1 [481472, 487331] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII YkfC HNHc DEXHc_Snf Feature: gene Location: 481472-481996 bp Feature: domain Description: conj_PilL Location: 481580-481889 bp Feature: domain Description: conj_PilL Location: 4 81580-4 81889 bp Feature: gene Location: 482210-483577 bp Feature: domain Description: KOG0389 Location: 482342-482471 bp Feature: domain Description: KOG0389 Location: 4 8234 2-4 824 71 bp Feature: domain Description: SF2_C_SNF Location: 483017-483413 bp Feature: domain Description: SF2_C_SNF Location: 4 83017-4 834 13 bp Feature: gene Location: 483672-485177 bp Feature: domain Description: RVT_N Location: 483675-483777 bp Feature: domain Description: RVT_N Location: 4 83675-4 83777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483822-484464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 83822-4 84 4 64 bp Feature: domain Description: YkfC Location: 484464-484773 bp Feature: domain Description: YkfC Location: 4 84 4 64 -4 84 773 bp Feature: domain Description: HNHc Note: nucleases Location: 484968-485130 bp Feature: domain Description: HNHc Note: nucleases Location: 4 84 968-4 85130 bp Feature: gene Location: 485969-486889 bp Feature: domain Description: DEXHc_Snf Location: 486188-486443 bp Feature: domain Description: DEXHc_Snf Location: 4 86188-4 864 4 3 bp Feature: gene Location: 487026-487331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: VWQD01001138.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1143, whole genome shotgun sequence (655 bp)
Overview 1 RT 1: 2-506 bp Neighborhood of RT #1 [2, 652] RVT-UG17 Feature: gene Location: 2-652 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 317-506 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 317-5 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17

Seq: VWQD01001144.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1149, whole genome shotgun sequence (374 bp)
Overview 1 RT 1: 3-300 bp Neighborhood of RT #1 [3, 371] RVT-UG11 Feature: gene Location: 3-371 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 90-300 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 90-300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: VWQD01001171.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1176, whole genome shotgun sequence (351 bp)
Overview 1 RT 1: 3-210 bp Neighborhood of RT #1 [3, 350] RVT-CRISPR-like Feature: gene Location: 3-350 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 57-210 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 57 -210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01001186.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1191, whole genome shotgun sequence (265 bp)
Overview 1 RT 1: 3-246 bp Neighborhood of RT #1 [3, 263] RVT-UNC Feature: gene Location: 3-263 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 78-246 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 78 -246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-UG7(RVT-UNC)

Seq: VWQD01001296.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1301, whole genome shotgun sequence (441 bp)
Overview 1 RT 1: 1-421 bp Neighborhood of RT #1 [1, 438] RVT-UNC Feature: gene Location: 1-438 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 106-421 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 106-421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10/RVT-GII/RVT-DGRs(RVT-UNC)

Seq: VWQD01001336.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1341, whole genome shotgun sequence (346 bp)
Overview 1 RT 1: 2-242 bp Neighborhood of RT #1 [2, 343] RVT-GII Feature: gene Location: 2-343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQD01001378.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1383, whole genome shotgun sequence (508 bp)
Overview 1 RT 1: 3-471 bp Neighborhood of RT #1 [3, 506] RVT-UNC Feature: gene Location: 3-506 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 30-471 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 30-471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18/RVT-UG19/RVT-DGRs/RVT-CRISPR(RVT-UNC)

Seq: VWQD01001433.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1438, whole genome shotgun sequence (284 bp)
Overview 1 RT 1: 3-246 bp Neighborhood of RT #1 [3, 281] RVT-GII Feature: gene Location: 3-281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQD01001450.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1455, whole genome shotgun sequence (262 bp)
Overview 1 RT 1: 1-250 bp Neighborhood of RT #1 [1, 261] RVT-CRISPR-like Feature: gene Location: 1-261 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 61-250 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 61-250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01001454.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1459, whole genome shotgun sequence (495 bp)
Overview 1 RT 1: 3-429 bp Neighborhood of RT #1 [3, 494] RVT-GII Feature: gene Location: 3-494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQD01001488.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1493, whole genome shotgun sequence (361 bp)
Overview 1 RT 1: 2-356 bp Neighborhood of RT #1 [2, 358] RVT-UG11 Feature: gene Location: 2-358 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 128-356 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 128-356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: VWQD01001521.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1526, whole genome shotgun sequence (381 bp)
Overview 1 RT 1: 1-343 bp Neighborhood of RT #1 [1, 378] RVT-CRISPR-like Feature: gene Location: 1-378 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 61-343 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 61-343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01001527.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1532, whole genome shotgun sequence (368 bp)
Overview 1 RT 1: 1-244 bp Neighborhood of RT #1 [1, 366] RVT-CRISPR-like Feature: gene Location: 1-366 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4-244 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4-244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01001560.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1565, whole genome shotgun sequence (375 bp)
Overview 1 RT 1: 1-352 bp Neighborhood of RT #1 [1, 372] RVT-CRISPR-like Feature: gene Location: 1-372 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 31-352 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 31-352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01001592.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1597, whole genome shotgun sequence (340 bp)
Overview 1 RT 1: 3-324 bp Neighborhood of RT #1 [3, 338] RVT-GII Feature: gene Location: 3-338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171-324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQD01000160.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_162, whole genome shotgun sequence (1417 bp)
Overview 1 RT 1: 268-1413 bp Neighborhood of RT #1 [268, 1415] RVT-UNC RVT_1 Feature: gene Location: 268-426 bp Feature: gene Location: 795-1415 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 930-1263 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 930-1263 bp Feature: domain Description: RVT_1 Location: 1344-1413 bp Feature: domain Description: RVT_1 Location: 1344-1413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2/RVT-GII/RVT-CRISPR(RVT-UNC), RVT_1 (pfam00078)

Seq: VWQD01001642.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1648, whole genome shotgun sequence (287 bp)
Overview 1 RT 1: 2-278 bp Neighborhood of RT #1 [2, 286] RVT-UNC Feature: gene Location: 2-286 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 26-278 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 26-278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-GII/RVT-CL(RVT-UNC)

Seq: VWQD01000163.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_165, whole genome shotgun sequence (849 bp)
Overview 1 RT 1: 3-825 bp Neighborhood of RT #1 [3, 848] RVT-UNC Feature: gene Location: 3-848 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 639-825 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 639-825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-UG16/RVT-GII/RVT-UG8(RVT-UNC)

Seq: VWQD01001659.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_1665, whole genome shotgun sequence (345 bp)
Overview 1 RT 1: 1-295 bp Neighborhood of RT #1 [1, 342] RVT-CRISPR-like Feature: gene Location: 1-342 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 37-295 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 37-295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000190.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_192, whole genome shotgun sequence (249 bp)
Overview 1 RT 1: 3-171 bp Neighborhood of RT #1 [3, 248] RVT-CRISPR-like Feature: gene Location: 3-248 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 24-171 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 24 -171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000250.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_252, whole genome shotgun sequence (999 bp)
Overview 1 RT 1: 3-162 bp Neighborhood of RT #1 [3, 818] RVT-GII Feature: gene Location: 3-818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQD01000266.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_269, whole genome shotgun sequence (214 bp)
Overview 1 RT 1: 1-169 bp Neighborhood of RT #1 [1, 213] RVT-CRISPR-like Feature: gene Location: 1-213 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 22-169 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 22-169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000270.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_273, whole genome shotgun sequence (1904 bp)
Overview 1 RT 1: 1-1191 bp Neighborhood of RT #1 [1, 1892] RT_nLTR_like RVT-CRISPR-like Feature: gene Location: 1-720 bp Feature: domain Description: RT_nLTR_like Location: 517-685 bp Feature: domain Description: RT_nLTR_like Location: 517-685 bp Feature: gene Location: 816-1892 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 858-1191 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 858-1191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_nLTR_like (cd01650), RVT-CRISPR

Seq: VWQD01000290.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_295, whole genome shotgun sequence (1213 bp)
Overview 1 RT 1: 3-1097 bp Neighborhood of RT #1 [3, 1097] RVT-GII Feature: gene Location: 3-680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54-441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54-441 bp Feature: gene Location: 900-1097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQD01000309.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_314, whole genome shotgun sequence (530 bp)
Overview 1 RT 1: 53-257 bp Neighborhood of RT #1 [53, 529] RVT-CRISPR-like Feature: gene Location: 53-529 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 62-257 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 62-257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000034.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_34, whole genome shotgun sequence (372 bp)
Overview 1 RT 1: 1-319 bp Neighborhood of RT #1 [1, 369] RVT-UNC Feature: gene Location: 1-369 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 10-319 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 10-319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: VWQD01000350.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_355, whole genome shotgun sequence (1485 bp)
Overview 1 RT 1: 2-1289 bp Neighborhood of RT #1 [2, 1483] RVT-UNC Feature: gene Location: 2-1483 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 671-1289 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 671-1289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-GII/RVT-UG11(RVT-UNC)

Seq: VWQD01000413.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_418, whole genome shotgun sequence (1076 bp)
Overview 1 RT 1: 2-1075 bp Neighborhood of RT #1 [2, 1075] RVT-UNC Feature: gene Location: 2-787 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 470-725 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 470-725 bp Feature: gene Location: 863-1075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-DGRs/RVT-UG1(RVT-UNC)

Seq: VWQD01000414.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_419, whole genome shotgun sequence (962 bp)
Overview 1 RT 1: 3-393 bp Neighborhood of RT #1 [3, 959] RVT-CRISPR-like Feature: gene Location: 3-959 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6-393 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6-393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000527.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_532, whole genome shotgun sequence (1312 bp)
Overview 1 RT 1: 3-1272 bp Neighborhood of RT #1 [3, 1310] R1-I-EN RVT-GII Feature: gene Location: 3-170 bp Feature: domain Description: R1-I-EN Location: 9-168 bp Feature: domain Description: R1-I-EN Location: 9-168 bp Feature: gene Location: 288-563 bp Feature: gene Location: 639-1310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1188-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1188-1272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R1-I-EN (cd09077), RVT-GII

Seq: VWQD01000533.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_538, whole genome shotgun sequence (285 bp)
Overview 1 RT 1: 2-239 bp Neighborhood of RT #1 [2, 283] RVT-UNC Feature: gene Location: 2-283 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 77-239 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 77-239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-UG10(RVT-UNC)

Seq: VWQD01000536.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_541, whole genome shotgun sequence (533 bp)
Overview 1 RT 1: 1-490 bp Neighborhood of RT #1 [1, 531] RVT-UG11 Feature: gene Location: 1-531 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 364-490 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 36 4-490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: VWQD01000006.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_6, whole genome shotgun sequence (641322 bp)
Overview 1 RT 1: 653-9515 bp 2 RT 2: 25779-36078 bp Neighborhood of RT #1 [653, 9523] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [25779, 36089] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 653-1327 bp Feature: domain Description: NTP_transferase_like_1 Location: 659-1298 bp Feature: domain Description: NTP_transferase_like_1 Location: 659-1298 bp Feature: gene Location: 1324-2340 bp Feature: domain Description: COG3178 Location: 1327-2326 bp Feature: domain Description: COG3178 Location: 1327-2326 bp Feature: gene Location: 3613-5325 bp Feature: domain Description: RVT_N Location: 3670-3913 bp Feature: domain Description: RVT_N Location: 3670-3913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3958-4594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3958-4594 bp Feature: domain Description: YkfC Location: 4801-4954 bp Feature: domain Description: YkfC Location: 4801-4954 bp Feature: domain Description: HNH Note: nucleases Location: 5131-5269 bp Feature: domain Description: HNH Note: nucleases Location: 5131-5269 bp Feature: gene Location: 5458-8250 bp Feature: domain Description: LptD Location: 5653-8236 bp Feature: domain Description: LptD Location: 5653-8236 bp Feature: gene Location: 8309-9523 bp Feature: domain Description: PRK10770 Location: 8321-9515 bp Feature: domain Description: PRK10770 Location: 8321-9515 bp Feature: gene Location: 25779-27632 bp Feature: domain Description: PRK05658 Location: 25791-27630 bp Feature: domain Description: PRK05658 Location: 25791-27630 bp Feature: gene Location: 27739-31476 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27847-28504 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27847-28504 bp Feature: domain Description: PRK09776 Location: 28717-29188 bp Feature: domain Description: PRK09776 Location: 28717-29188 bp Feature: domain Description: PAS Location: 29239-29770 bp Feature: domain Description: PAS Location: 29239-29770 bp Feature: domain Description: PRK10060 Location: 29779-31426 bp Feature: domain Description: PRK10060 Location: 29779-31426 bp Feature: gene Location: 32557-34242 bp Feature: domain Description: RVT_N Location: 32614-32854 bp Feature: domain Description: RVT_N Location: 32614-32854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32902-33538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32902-33538 bp Feature: domain Description: GIIM Note: maturase Location: 33592-33823 bp Feature: domain Description: GIIM Note: maturase Location: 33592-33823 bp Feature: domain Description: HNH Note: nucleases Location: 34075-34213 bp Feature: domain Description: HNH Note: nucleases Location: 34075-34213 bp Feature: gene Location: 34545-34706 bp Feature: gene Location: 34968-36089 bp Feature: domain Description: COG3177 Location: 34986-36078 bp Feature: domain Description: COG3177 Location: 34986-36078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: VWQD01000597.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_602, whole genome shotgun sequence (564 bp)
Overview 1 RT 1: 2-562 bp Neighborhood of RT #1 [2, 562] RVT-CRISPR-like Feature: gene Location: 2-205 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8-206 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8-206 bp Feature: gene Location: 242-562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000634.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_639, whole genome shotgun sequence (367 bp)
Overview 1 RT 1: 1-247 bp Neighborhood of RT #1 [1, 366] RVT-CRISPR-like Feature: gene Location: 1-366 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4-247 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4-247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000671.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_676, whole genome shotgun sequence (492 bp)
Overview 1 RT 1: 1-475 bp Neighborhood of RT #1 [1, 489] RVT-CRISPR-like RVT-GII Feature: gene Location: 1-255 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 103-178 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 103-178 bp Feature: gene Location: 274-489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RVT-GII

Seq: VWQD01000675.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_680, whole genome shotgun sequence (328 bp)
Overview 1 RT 1: 3-321 bp Neighborhood of RT #1 [3, 326] RVT-CRISPR-like Feature: gene Location: 3-326 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6-321 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6-321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000688.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_693, whole genome shotgun sequence (839 bp)
Overview 1 RT 1: 3-294 bp Neighborhood of RT #1 [3, 836] RVT-CRISPR-like Feature: gene Location: 3-836 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 42-294 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 42 -294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000701.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_706, whole genome shotgun sequence (573 bp)
Overview 1 RT 1: 3-558 bp Neighborhood of RT #1 [3, 572] RVT-Retrons Feature: gene Location: 3-572 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 315-558 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 315-558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: VWQD01000706.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_711, whole genome shotgun sequence (679 bp)
Overview 1 RT 1: 2-602 bp Neighborhood of RT #1 [2, 676] RVT-CRISPR-like Feature: gene Location: 2-676 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 167-602 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 167-602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000712.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_717, whole genome shotgun sequence (333 bp)
Overview 1 RT 1: 3-324 bp Neighborhood of RT #1 [3, 332] RVT-CRISPR-like Feature: gene Location: 3-332 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 15-324 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 15-324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000742.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_747, whole genome shotgun sequence (339 bp)
Overview 1 RT 1: 3-279 bp Neighborhood of RT #1 [3, 338] RVT-CRISPR-like Feature: gene Location: 3-338 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 45-279 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 45-279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000750.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_755, whole genome shotgun sequence (319 bp)
Overview 1 RT 1: 1-307 bp Neighborhood of RT #1 [1, 318] RVT-UNC Feature: gene Location: 1-318 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 34-307 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 34-307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-CRISPR/RVT-GII(RVT-UNC)

Seq: VWQD01000775.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_780, whole genome shotgun sequence (521 bp)
Overview 1 RT 1: 96-435 bp Neighborhood of RT #1 [96, 449] RVT-CRISPR-like Feature: gene Location: 96-449 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 108-435 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 108-435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000792.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_797, whole genome shotgun sequence (735 bp)
Overview 1 RT 1: 3-732 bp Neighborhood of RT #1 [3, 734] RVT-UNC Feature: gene Location: 3-734 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 102-732 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 102-732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: VWQD01000808.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_813, whole genome shotgun sequence (435 bp)
Overview 1 RT 1: 2-416 bp Neighborhood of RT #1 [2, 433] RVT-UG11 Feature: gene Location: 2-433 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 92-416 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 92-416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: VWQD01000889.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_894, whole genome shotgun sequence (464 bp)
Overview 1 RT 1: 3-171 bp Neighborhood of RT #1 [3, 341] RVT-CRISPR-like Feature: gene Location: 3-341 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6-171 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6-171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000913.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_918, whole genome shotgun sequence (252 bp)
Overview 1 RT 1: 2-224 bp Neighborhood of RT #1 [2, 250] RVT-CRISPR-like Feature: gene Location: 2-250 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 35-224 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 35-224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000963.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_968, whole genome shotgun sequence (846 bp)
Overview 1 RT 1: 3-417 bp Neighborhood of RT #1 [3, 806] RVT-CRISPR-like Feature: gene Location: 3-806 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9-417 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9-417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQD01000098.1 Pseudomonas aeruginosa strain L33 L33_L1.R1.clean_(paired)_contig_99, whole genome shotgun sequence (6761 bp)
Overview 1 RT 1: 2-4776 bp Neighborhood of RT #1 [2, 5819] RVT-CRISPR-like R1-I-EN RVT-CRISPR-like Feature: gene Location: 2-2440 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 878-1406 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 878-1406 bp Feature: gene Location: 2904-5819 bp Feature: domain Description: R1-I-EN Location: 2919-3204 bp Feature: domain Description: R1-I-EN Location: 2919-3204 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4191-4776 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4191-4776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, R1-I-EN (cd09077)