myRT

myRT report for GCA_008629815.1_ASM862981v1

Download annotations/find similar RTs

Seq: VWQE01000001.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_1, whole genome shotgun sequence (641068 bp)
Overview 1 RT 1: 653-9515 bp 2 RT 2: 25779-36058 bp Neighborhood of RT #1 [653, 9523] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [25779, 36069] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 653-1327 bp Feature: domain Description: NTP_transferase_like_1 Location: 659-1298 bp Feature: domain Description: NTP_transferase_like_1 Location: 659-1 298 bp Feature: gene Location: 1324-2340 bp Feature: domain Description: COG3178 Location: 1327-2326 bp Feature: domain Description: COG31 78 Location: 1 327-2326 bp Feature: gene Location: 3613-5325 bp Feature: domain Description: RVT_N Location: 3670-3913 bp Feature: domain Description: RVT_N Location: 3670-391 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3958-4594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3958-4594 bp Feature: domain Description: YkfC Location: 4801-4954 bp Feature: domain Description: YkfC Location: 4801 -4954 bp Feature: domain Description: HNH Note: nucleases Location: 5131-5269 bp Feature: domain Description: HNH Note: nucleases Location: 51 31 -5269 bp Feature: gene Location: 5458-8250 bp Feature: domain Description: LptD Location: 5653-8236 bp Feature: domain Description: LptD Location: 5653-8236 bp Feature: gene Location: 8309-9523 bp Feature: domain Description: PRK10770 Location: 8321-9515 bp Feature: domain Description: PRK1 0770 Location: 8321 -951 5 bp Feature: gene Location: 25779-27632 bp Feature: domain Description: PRK05658 Location: 25791-27630 bp Feature: domain Description: PRK05658 Location: 25791 -27630 bp Feature: gene Location: 27739-31476 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27847-28504 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27847-28504 bp Feature: domain Description: PRK09776 Location: 28717-29188 bp Feature: domain Description: PRK09776 Location: 2871 7-291 88 bp Feature: domain Description: PAS Location: 29239-29770 bp Feature: domain Description: PAS Location: 29239-29770 bp Feature: domain Description: PRK10060 Location: 29779-31426 bp Feature: domain Description: PRK1 0060 Location: 29779-31 426 bp Feature: gene Location: 32537-34222 bp Feature: domain Description: RVT_N Location: 32594-32834 bp Feature: domain Description: RVT_N Location: 32594-32834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32882-33518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32882-3351 8 bp Feature: domain Description: GIIM Note: maturase Location: 33572-33803 bp Feature: domain Description: GIIM Note: maturase Location: 33572-33803 bp Feature: domain Description: HNH Note: nucleases Location: 34055-34193 bp Feature: domain Description: HNH Note: nucleases Location: 34055-341 93 bp Feature: gene Location: 34525-34686 bp Feature: gene Location: 34948-36069 bp Feature: domain Description: COG3177 Location: 34966-36058 bp Feature: domain Description: COG31 77 Location: 34966-36058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: VWQE01001094.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_1098, whole genome shotgun sequence (354 bp)
Overview 1 RT 1: 2-191 bp Neighborhood of RT #1 [2, 352] RVT-UNC Feature: gene Location: 2-352 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 62-191 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 62 -191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UNC/RVT-UG22/RVT-UG11/RVT-DGRs(RVT-UNC)

Seq: VWQE01001173.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_1177, whole genome shotgun sequence (352 bp)
Overview 1 RT 1: 201-345 bp Neighborhood of RT #1 [201, 350] RVT-UNC Feature: gene Location: 201-350 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 225-345 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 225-3 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17/RVT-UG26/RVT-UG20/RVT-DGRs(RVT-UNC)

Seq: VWQE01001215.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_1219, whole genome shotgun sequence (426 bp)
Overview 1 RT 1: 168-399 bp Neighborhood of RT #1 [168, 425] RVT-DGRs Feature: gene Location: 168-425 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 177-399 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 177-399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWQE01001278.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_1282, whole genome shotgun sequence (376 bp)
Overview 1 RT 1: 2-245 bp Neighborhood of RT #1 [2, 373] RVT-UNC Feature: gene Location: 2-373 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 101-245 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 101-245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-GII/RVT-UG17(RVT-UNC)

Seq: VWQE01000134.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_134, whole genome shotgun sequence (3820 bp)
Overview 1 RT 1: 3-3737 bp Neighborhood of RT #1 [3, 3760] PRE_C2HC RVT-CRISPR-like Feature: gene Location: 3-1784 bp Feature: domain Description: PRE_C2HC Location: 975-1173 bp Feature: domain Description: PRE_C2HC Location: 975-1173 bp Feature: gene Location: 2396-3760 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3383-3737 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3383-3737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRE_C2HC (smart00596), RVT-CRISPR

Seq: VWQE01000152.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_153, whole genome shotgun sequence (804 bp)
Overview 1 RT 1: 2-623 bp Neighborhood of RT #1 [2, 802] RVT-GII Feature: gene Location: 2-802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59-623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59-623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQE01000170.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_172, whole genome shotgun sequence (943 bp)
Overview 1 RT 1: 630-864 bp Neighborhood of RT #1 [630, 941] RVT-GII Feature: gene Location: 630-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-8 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQE01000178.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_180, whole genome shotgun sequence (542 bp)
Overview 1 RT 1: 2-539 bp Neighborhood of RT #1 [2, 541] RVT-UNC Feature: gene Location: 2-541 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 347-539 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 347-539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: VWQE01000019.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_19, whole genome shotgun sequence (667007 bp)
Overview 1 RT 1: 383571-389430 bp Neighborhood of RT #1 [383571, 389430] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII YkfC HNHc DEXHc_Snf Feature: gene Location: 383571-384095 bp Feature: domain Description: conj_PilL Location: 383679-383988 bp Feature: domain Description: conj_PilL Location: 383679-383988 bp Feature: gene Location: 384309-385676 bp Feature: domain Description: KOG0389 Location: 384441-384570 bp Feature: domain Description: KOG0389 Location: 384441-384570 bp Feature: domain Description: SF2_C_SNF Location: 385116-385512 bp Feature: domain Description: SF2_C_SNF Location: 385116-385512 bp Feature: gene Location: 385771-387276 bp Feature: domain Description: RVT_N Location: 385774-385876 bp Feature: domain Description: RVT_N Location: 385774-385876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385921-386563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385921-386563 bp Feature: domain Description: YkfC Location: 386563-386872 bp Feature: domain Description: YkfC Location: 386563-386872 bp Feature: domain Description: HNHc Note: nucleases Location: 387067-387229 bp Feature: domain Description: HNHc Note: nucleases Location: 387067-387229 bp Feature: gene Location: 388068-388988 bp Feature: domain Description: DEXHc_Snf Location: 388287-388542 bp Feature: domain Description: DEXHc_Snf Location: 388287-388542 bp Feature: gene Location: 389125-389430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: VWQE01000200.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_203, whole genome shotgun sequence (1684 bp)
Overview 1 RT 1: 3-939 bp Neighborhood of RT #1 [3, 1649] RVT-CRISPR-like Feature: gene Location: 3-1649 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 324-939 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 324-939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQE01000239.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_242, whole genome shotgun sequence (1129 bp)
Overview 1 RT 1: 2-1094 bp Neighborhood of RT #1 [2, 1126] RVT-UNC Feature: gene Location: 2-1126 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 479-1094 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 479-1094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-UG11(RVT-UNC)

Seq: VWQE01000288.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_291, whole genome shotgun sequence (258 bp)
Overview 1 RT 1: 2-251 bp Neighborhood of RT #1 [2, 256] RVT-GII Feature: gene Location: 2-256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92-251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92-251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQE01000359.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_363, whole genome shotgun sequence (1183 bp)
Overview 1 RT 1: 3-1164 bp Neighborhood of RT #1 [3, 1181] RVT-CRISPR-like Feature: gene Location: 3-1181 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 765-1164 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 765-1164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQE01000402.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_406, whole genome shotgun sequence (502 bp)
Overview 1 RT 1: 1-430 bp Neighborhood of RT #1 [1, 501] RVT-UNC Feature: gene Location: 1-501 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 250-430 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 250-430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b/RVT-GII/RVT-UG17/RVT-UG16(RVT-UNC)

Seq: VWQE01000419.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_423, whole genome shotgun sequence (316 bp)
Overview 1 RT 1: 1-268 bp Neighborhood of RT #1 [1, 315] RVT-UNC Feature: gene Location: 1-315 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 28-268 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 28-268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA/RVT-GII/RVT-UG28(RVT-UNC)

Seq: VWQE01000430.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_434, whole genome shotgun sequence (333 bp)
Overview 1 RT 1: 2-329 bp Neighborhood of RT #1 [2, 331] RVT-GII Feature: gene Location: 2-331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35-329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQE01000578.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_582, whole genome shotgun sequence (461 bp)
Overview 1 RT 1: 1-415 bp Neighborhood of RT #1 [1, 459] RVT-CRISPR-like Feature: gene Location: 1-459 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 91-415 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 91-415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQE01000633.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_637, whole genome shotgun sequence (1179 bp)
Overview 1 RT 1: 3-1125 bp Neighborhood of RT #1 [3, 1178] RT_nLTR_like RVT-CRISPR-like Feature: gene Location: 3-1178 bp Feature: domain Description: RT_nLTR_like Location: 831-909 bp Feature: domain Description: RT_nLTR_like Location: 831-909 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 954-1125 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 954-1125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_nLTR_like (cd01650), RVT-CRISPR

Seq: VWQE01000678.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_682, whole genome shotgun sequence (424 bp)
Overview 1 RT 1: 2-422 bp Neighborhood of RT #1 [2, 421] RVT-GII Feature: gene Location: 2-421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182-422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182-422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQE01000728.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_732, whole genome shotgun sequence (1066 bp)
Overview 1 RT 1: 3-1044 bp Neighborhood of RT #1 [3, 1064] RVT-CRISPR-like Feature: gene Location: 3-1064 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 810-1044 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 810-1044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQE01000742.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_746, whole genome shotgun sequence (256 bp)
Overview 1 RT 1: 45-249 bp Neighborhood of RT #1 [45, 254] RVT-UNC Feature: gene Location: 45-254 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 129-249 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 129-249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26/RVT-DGRs/RVT-GII(RVT-UNC)

Seq: VWQE01000755.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_759, whole genome shotgun sequence (432 bp)
Overview 1 RT 1: 2-185 bp Neighborhood of RT #1 [2, 430] RVT-GII Feature: gene Location: 2-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQE01000756.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_760, whole genome shotgun sequence (427 bp)
Overview 1 RT 1: 2-410 bp Neighborhood of RT #1 [2, 424] RVT-CRISPR-like Feature: gene Location: 2-424 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8-410 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8-410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQE01000869.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_873, whole genome shotgun sequence (553 bp)
Overview 1 RT 1: 238-544 bp Neighborhood of RT #1 [238, 552] RVT-CRISPR-like Feature: gene Location: 238-552 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 385-544 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 385-544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQE01000879.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_883, whole genome shotgun sequence (376 bp)
Overview 1 RT 1: 2-341 bp Neighborhood of RT #1 [2, 373] RVT-CRISPR-like Feature: gene Location: 2-373 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8-341 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 8-341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQE01000913.1 Pseudomonas aeruginosa strain L32 L32_L1.R1.clean_(paired)_contig_917, whole genome shotgun sequence (420 bp)
Overview 1 RT 1: 1-415 bp Neighborhood of RT #1 [1, 417] RVT-UNC Feature: gene Location: 1-417 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 184-415 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 184-415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-GII/RVT-UG3(RVT-UNC)