myRT

myRT report for GCA_008629905.1_ASM862990v1

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Seq: VWQJ01000991.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_1004, whole genome shotgun sequence (521 bp)
Overview 1 RT 1: 3-507 bp Neighborhood of RT #1 [3, 518] RVT-GII Feature: gene Location: 3-518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33-507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQJ01001005.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_1018, whole genome shotgun sequence (454 bp)
Overview 1 RT 1: 1-406 bp Neighborhood of RT #1 [1, 453] RVT-CRISPR-like Feature: gene Location: 1-453 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 94-406 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 94-406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01001064.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_1077, whole genome shotgun sequence (343 bp)
Overview 1 RT 1: 3-324 bp Neighborhood of RT #1 [3, 341] RVT-CRISPR-like Feature: gene Location: 3-341 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 147-324 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 147-3 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01001065.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_1078, whole genome shotgun sequence (248 bp)
Overview 1 RT 1: 1-229 bp Neighborhood of RT #1 [1, 246] RVT-GII Feature: gene Location: 1-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58-229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58-229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQJ01001142.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_1156, whole genome shotgun sequence (408 bp)
Overview 1 RT 1: 3-390 bp Neighborhood of RT #1 [3, 407] RVT-CRISPR-like Feature: gene Location: 3-407 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 117-390 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 117-390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01001192.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_1206, whole genome shotgun sequence (293 bp)
Overview 1 RT 1: 2-263 bp Neighborhood of RT #1 [2, 292] RVT-UNC Feature: gene Location: 2-292 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 8-263 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 8-26 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2/RVT-UG28b/RVT-CRISPR/RVT-DGRs(RVT-UNC)

Seq: VWQJ01001266.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_1280, whole genome shotgun sequence (390 bp)
Overview 1 RT 1: 3-324 bp Neighborhood of RT #1 [3, 389] RVT-UNC Feature: gene Location: 3-389 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 33-324 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 33-324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-UG19/RVT-UG18/RVT-UNC(RVT-UNC)

Seq: VWQJ01000141.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_142, whole genome shotgun sequence (1059 bp)
Overview 1 RT 1: 23-1016 bp Neighborhood of RT #1 [23, 1057] RVT-CRISPR-like Feature: gene Location: 23-1057 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 602-1016 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 602-1016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000155.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_156, whole genome shotgun sequence (1385 bp)
Overview 1 RT 1: 51-1332 bp Neighborhood of RT #1 [51, 1382] RVT-CRISPR-like Feature: gene Location: 51-1382 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 936-1332 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9 36-1332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000170.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_171, whole genome shotgun sequence (1956 bp)
Overview 1 RT 1: 1-1918 bp Neighborhood of RT #1 [1, 1953] R1-I-EN RVT-CRISPR-like Feature: gene Location: 1-1953 bp Feature: domain Description: R1-I-EN Location: 25-427 bp Feature: domain Description: R1-I-EN Location: 25-427 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1408-1918 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1408-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R1-I-EN (cd09077), RVT-CRISPR

Seq: VWQJ01000178.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_179, whole genome shotgun sequence (522 bp)
Overview 1 RT 1: 111-492 bp Neighborhood of RT #1 [111, 521] RVT-CRISPR-like Feature: gene Location: 111-521 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 261-492 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 261-492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000179.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_180, whole genome shotgun sequence (1100 bp)
Overview 1 RT 1: 103-869 bp Neighborhood of RT #1 [103, 1099] RVT-CRISPR-like Feature: gene Location: 103-273 bp Feature: gene Location: 521-1099 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 608-869 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 608-869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000213.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_214, whole genome shotgun sequence (653 bp)
Overview 1 RT 1: 2-407 bp Neighborhood of RT #1 [2, 427] RVT-CRISPR-like Feature: gene Location: 2-427 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5-407 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5-407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000218.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_220, whole genome shotgun sequence (689 bp)
Overview 1 RT 1: 2-611 bp Neighborhood of RT #1 [2, 688] RVT-CRISPR-like Feature: gene Location: 2-688 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 74-611 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 74-611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000261.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_264, whole genome shotgun sequence (1599 bp)
Overview 1 RT 1: 290-1571 bp Neighborhood of RT #1 [290, 1597] HTH_32 DDE_3 RVT-UNC Feature: gene Location: 290-1342 bp Feature: domain Description: HTH_32 Location: 416-596 bp Feature: domain Description: HTH_32 Location: 416-596 bp Feature: domain Description: DDE_3 Location: 944-1205 bp Feature: domain Description: DDE_3 Location: 944-1205 bp Feature: gene Location: 1403-1597 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1415-1571 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1415 -15 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), DDE_3 (pfam13358), RVT-UG7/RVT-CRISPR/RVT-GII(RVT-UNC)

Seq: VWQJ01000267.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_270, whole genome shotgun sequence (287 bp)
Overview 1 RT 1: 2-215 bp Neighborhood of RT #1 [2, 286] RVT-GII Feature: gene Location: 2-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20-215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQJ01000271.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_274, whole genome shotgun sequence (320 bp)
Overview 1 RT 1: 1-268 bp Neighborhood of RT #1 [1, 318] RVT-CRISPR-like Feature: gene Location: 1-318 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 85-268 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 85-268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000288.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_292, whole genome shotgun sequence (392 bp)
Overview 1 RT 1: 3-300 bp Neighborhood of RT #1 [3, 389] RVT-CRISPR-like Feature: gene Location: 3-389 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 48-300 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 48-300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000308.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_313, whole genome shotgun sequence (439 bp)
Overview 1 RT 1: 3-378 bp Neighborhood of RT #1 [3, 437] RVT-CRISPR-like Feature: gene Location: 3-437 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 24-378 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 24-378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000325.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_330, whole genome shotgun sequence (386 bp)
Overview 1 RT 1: 1-304 bp Neighborhood of RT #1 [1, 384] RVT-UNC Feature: gene Location: 1-384 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 136-304 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 136-304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: VWQJ01000339.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_344, whole genome shotgun sequence (962 bp)
Overview 1 RT 1: 213-402 bp Neighborhood of RT #1 [213, 959] RVT-AbiA Feature: gene Location: 213-959 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 246-402 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 246-402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA

Seq: VWQJ01000391.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_397, whole genome shotgun sequence (381 bp)
Overview 1 RT 1: 3-381 bp Neighborhood of RT #1 [3, 380] RT_nLTR_like RVT-UNC Feature: gene Location: 3-182 bp Feature: domain Description: RT_nLTR_like Location: 6-153 bp Feature: domain Description: RT_nLTR_like Location: 6-153 bp Feature: gene Location: 183-380 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 186-381 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 186-381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_nLTR_like (cd01650), RVT-CRISPR/RVT-GII/RVT-UG19(RVT-UNC)

Seq: VWQJ01000044.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_44, whole genome shotgun sequence (1956 bp)
Overview 1 RT 1: 2-737 bp Neighborhood of RT #1 [2, 1408] RVT-CRISPR-like Feature: gene Location: 2-1408 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 125-737 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 125-737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000048.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_48, whole genome shotgun sequence (3228 bp)
Overview 1 RT 1: 3-3156 bp Neighborhood of RT #1 [3, 3227] PRE_C2HC AIR1 Exo_endo_phos_2 RVT-UNC Feature: gene Location: 3-968 bp Feature: domain Description: PRE_C2HC Location: 156-357 bp Feature: domain Description: PRE_C2HC Location: 156-357 bp Feature: domain Description: AIR1 Location: 360-576 bp Feature: domain Description: AIR1 Location: 360-576 bp Feature: gene Location: 1068-3227 bp Feature: domain Description: Exo_endo_phos_2 Location: 1305-1641 bp Feature: domain Description: Exo_endo_phos_2 Location: 1305-1641 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2631-3156 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2631-3156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRE_C2HC (smart00596), AIR1 (COG5082), Exo_endo_phos_2 (pfam14529), RVT-UG2/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: VWQJ01000486.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_493, whole genome shotgun sequence (718 bp)
Overview 1 RT 1: 3-543 bp Neighborhood of RT #1 [3, 566] RVT-UNC Feature: gene Location: 3-566 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 24-543 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 24-543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG23/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: VWQJ01000514.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_521, whole genome shotgun sequence (359 bp)
Overview 1 RT 1: 2-359 bp Neighborhood of RT #1 [2, 358] RVT-GII Feature: gene Location: 2-358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56-359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56-359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQJ01000544.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_552, whole genome shotgun sequence (746 bp)
Overview 1 RT 1: 24-735 bp Neighborhood of RT #1 [24, 743] RVT-GII Feature: gene Location: 24-743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474-735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 474-735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQJ01000693.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_704, whole genome shotgun sequence (497 bp)
Overview 1 RT 1: 3-486 bp Neighborhood of RT #1 [3, 494] RVT-CRISPR-like Feature: gene Location: 3-494 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 399-486 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 399-486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQJ01000078.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_78, whole genome shotgun sequence (1802 bp)
Overview 1 RT 1: 67-1799 bp Neighborhood of RT #1 [67, 1799] RVT-GII Feature: gene Location: 67-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85-478 bp Feature: gene Location: 1611-1799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQJ01000772.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_783, whole genome shotgun sequence (425 bp)
Overview 1 RT 1: 3-420 bp Neighborhood of RT #1 [3, 422] RVT-UNC Feature: gene Location: 3-422 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 177-420 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 177-420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-DGRs/RVT-CRISPR(RVT-UNC)

Seq: VWQJ01000774.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_785, whole genome shotgun sequence (507 bp)
Overview 1 RT 1: 3-486 bp Neighborhood of RT #1 [3, 506] RVT-UG11 Feature: gene Location: 3-506 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 273-486 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 273-486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11

Seq: VWQJ01000974.1 Pseudomonas aeruginosa strain L26 L26_L1.R1.clean_(paired)_contig_987, whole genome shotgun sequence (546 bp)
Overview 1 RT 1: 2-488 bp Neighborhood of RT #1 [2, 544] RVT-GII Feature: gene Location: 2-544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320-488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 0-488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII