myRT

myRT report for GCA_008629915.1_ASM862991v1

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Seq: VWQL01000013.1 Pseudomonas aeruginosa strain L23 L23_L1.R1.clean_(paired)_contig_13, whole genome shotgun sequence (806394 bp)
Overview 1 RT 1: 420799-426551 bp Neighborhood of RT #1 [420799, 426658] DEXHc_Snf RVT_N RVT-GII YkfC HNHc KOG0389 SF2_C_SNF conj_PilL Feature: gene Location: 420799-421104 bp Feature: gene Location: 421241-422161 bp Feature: domain Description: DEXHc_Snf Location: 421460-421715 bp Feature: domain Description: DEXHc_Snf Location: 421 460-421 71 5 bp Feature: gene Location: 422761-424458 bp Feature: domain Description: RVT_N Location: 422815-423058 bp Feature: domain Description: RVT_N Location: 42281 5-423058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423103-423745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4231 03-423745 bp Feature: domain Description: YkfC Location: 423745-424054 bp Feature: domain Description: YkfC Location: 423745-424054 bp Feature: domain Description: HNHc Note: nucleases Location: 424249-424411 bp Feature: domain Description: HNHc Note: nucleases Location: 424249-42441 1 bp Feature: gene Location: 424526-425920 bp Feature: domain Description: KOG0389 Location: 424685-424814 bp Feature: domain Description: KOG0389 Location: 424685-42481 4 bp Feature: domain Description: SF2_C_SNF Location: 425360-425756 bp Feature: domain Description: SF2_C_SNF Location: 425360-425756 bp Feature: gene Location: 426059-426658 bp Feature: domain Description: conj_PilL Location: 426242-426551 bp Feature: domain Description: conj_PilL Location: 426242-426551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), conj_PilL (TIGR03748)

Seq: VWQL01000154.1 Pseudomonas aeruginosa strain L23 L23_L1.R1.clean_(paired)_contig_155, whole genome shotgun sequence (434 bp)
Overview 1 RT 1: 3-312 bp Neighborhood of RT #1 [3, 431] RVT-CRISPR-like Feature: gene Location: 3-431 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 45-312 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 45-312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQL01000176.1 Pseudomonas aeruginosa strain L23 L23_L1.R1.clean_(paired)_contig_177, whole genome shotgun sequence (1086 bp)
Overview 1 RT 1: 1-661 bp Neighborhood of RT #1 [1, 1083] RVT-CRISPR-like Feature: gene Location: 1-1083 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 136-661 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 13 6-661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQL01000256.1 Pseudomonas aeruginosa strain L23 L23_L1.R1.clean_(paired)_contig_259, whole genome shotgun sequence (1136 bp)
Overview 1 RT 1: 1-753 bp Neighborhood of RT #1 [1, 753] RVT-CRISPR-like Feature: gene Location: 1-519 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 28-478 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 28-4 78 bp Feature: gene Location: 598-753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQL01000261.1 Pseudomonas aeruginosa strain L23 L23_L1.R1.clean_(paired)_contig_264, whole genome shotgun sequence (749 bp)
Overview 1 RT 1: 1-745 bp Neighborhood of RT #1 [1, 747] RVT-CRISPR-like Feature: gene Location: 1-747 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 541-745 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5 41-745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQL01000277.1 Pseudomonas aeruginosa strain L23 L23_L1.R1.clean_(paired)_contig_282, whole genome shotgun sequence (263 bp)
Overview 1 RT 1: 2-119 bp Neighborhood of RT #1 [2, 223] RVT-DGRs Feature: gene Location: 2-223 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14-119 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14-119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: VWQL01000031.1 Pseudomonas aeruginosa strain L23 L23_L1.R1.clean_(paired)_contig_31, whole genome shotgun sequence (326792 bp)
Overview 1 RT 1: 654-9516 bp 2 RT 2: 25780-36079 bp Neighborhood of RT #1 [654, 9524] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [25780, 36090] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 654-1328 bp Feature: domain Description: NTP_transferase_like_1 Location: 660-1299 bp Feature: domain Description: NTP_transferase_like_1 Location: 660-1299 bp Feature: gene Location: 1325-2341 bp Feature: domain Description: COG3178 Location: 1328-2327 bp Feature: domain Description: COG317 8 Location: 1328-2327 bp Feature: gene Location: 3614-5326 bp Feature: domain Description: RVT_N Location: 3671-3914 bp Feature: domain Description: RVT_N Location: 367 1-3914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3959-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3959-4595 bp Feature: domain Description: YkfC Location: 4802-4955 bp Feature: domain Description: YkfC Location: 4802-4955 bp Feature: domain Description: HNH Note: nucleases Location: 5132-5270 bp Feature: domain Description: HNH Note: nucleases Location: 5132-527 0 bp Feature: gene Location: 5459-8251 bp Feature: domain Description: LptD Location: 5654-8237 bp Feature: domain Description: LptD Location: 5654-8237 bp Feature: gene Location: 8310-9524 bp Feature: domain Description: PRK10770 Location: 8322-9516 bp Feature: domain Description: PRK107 7 0 Location: 8322-9516 bp Feature: gene Location: 25780-27633 bp Feature: domain Description: PRK05658 Location: 25792-27631 bp Feature: domain Description: PRK05658 Location: 257 92-27 631 bp Feature: gene Location: 27740-31477 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27848-28505 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27 848-28505 bp Feature: domain Description: PRK09776 Location: 28718-29189 bp Feature: domain Description: PRK097 7 6 Location: 287 18-29189 bp Feature: domain Description: PAS Location: 29240-29771 bp Feature: domain Description: PAS Location: 29240-297 7 1 bp Feature: domain Description: PRK10060 Location: 29780-31427 bp Feature: domain Description: PRK10060 Location: 297 80-31427 bp Feature: gene Location: 32558-34243 bp Feature: domain Description: RVT_N Location: 32615-32855 bp Feature: domain Description: RVT_N Location: 32615-32855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32903-33539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32903-33539 bp Feature: domain Description: GIIM Note: maturase Location: 33593-33824 bp Feature: domain Description: GIIM Note: maturase Location: 33593-33824 bp Feature: domain Description: HNH Note: nucleases Location: 34076-34214 bp Feature: domain Description: HNH Note: nucleases Location: 3407 6-34214 bp Feature: gene Location: 34546-34707 bp Feature: gene Location: 34969-36090 bp Feature: domain Description: COG3177 Location: 34987-36079 bp Feature: domain Description: COG317 7 Location: 34987 -3607 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )