myRT

myRT report for GCA_008629985.1_ASM862998v1

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Seq: VWQP01000001.1 Pseudomonas aeruginosa strain L6 L6_L1.R1.clean_(paired)_contig_1, whole genome shotgun sequence (641086 bp)
Overview 1 RT 1: 652-9514 bp 2 RT 2: 25778-36077 bp Neighborhood of RT #1 [652, 9522] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [25778, 36088] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 652-1326 bp Feature: domain Description: NTP_transferase_like_1 Location: 658-1297 bp Feature: domain Description: NTP_transferase_like_1 Location: 658-1 297 bp Feature: gene Location: 1323-2339 bp Feature: domain Description: COG3178 Location: 1326-2325 bp Feature: domain Description: COG31 78 Location: 1 326-2325 bp Feature: gene Location: 3612-5324 bp Feature: domain Description: RVT_N Location: 3669-3912 bp Feature: domain Description: RVT_N Location: 3669-391 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3957-4593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3957-4593 bp Feature: domain Description: YkfC Location: 4800-4953 bp Feature: domain Description: YkfC Location: 4800-4953 bp Feature: domain Description: HNH Note: nucleases Location: 5130-5268 bp Feature: domain Description: HNH Note: nucleases Location: 51 30-5268 bp Feature: gene Location: 5457-8249 bp Feature: domain Description: LptD Location: 5652-8235 bp Feature: domain Description: LptD Location: 5652-8235 bp Feature: gene Location: 8308-9522 bp Feature: domain Description: PRK10770 Location: 8320-9514 bp Feature: domain Description: PRK1 0770 Location: 8320-951 4 bp Feature: gene Location: 25778-27631 bp Feature: domain Description: PRK05658 Location: 25790-27629 bp Feature: domain Description: PRK05658 Location: 25790-27629 bp Feature: gene Location: 27738-31475 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27846-28503 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 27846-28503 bp Feature: domain Description: PRK09776 Location: 28716-29187 bp Feature: domain Description: PRK09776 Location: 2871 6-291 87 bp Feature: domain Description: PAS Location: 29238-29769 bp Feature: domain Description: PAS Location: 29238-29769 bp Feature: domain Description: PRK10060 Location: 29778-31425 bp Feature: domain Description: PRK1 0060 Location: 29778-31 425 bp Feature: gene Location: 32556-34241 bp Feature: domain Description: RVT_N Location: 32613-32853 bp Feature: domain Description: RVT_N Location: 3261 3-32853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32901-33537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32901 -33537 bp Feature: domain Description: GIIM Note: maturase Location: 33591-33822 bp Feature: domain Description: GIIM Note: maturase Location: 33591 -33822 bp Feature: domain Description: HNH Note: nucleases Location: 34074-34212 bp Feature: domain Description: HNH Note: nucleases Location: 34074-3421 2 bp Feature: gene Location: 34544-34705 bp Feature: gene Location: 34967-36088 bp Feature: domain Description: COG3177 Location: 34985-36077 bp Feature: domain Description: COG31 77 Location: 34985-36077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: VWQP01000119.1 Pseudomonas aeruginosa strain L6 L6_L1.R1.clean_(paired)_contig_119, whole genome shotgun sequence (2834 bp)
Overview 1 RT 1: 1-2833 bp Neighborhood of RT #1 [1, 2833] RVT-CRISPR-like Exo_endo_phos_2 RVT_1 Feature: gene Location: 1-849 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 88-355 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 88-355 bp Feature: gene Location: 833-2599 bp Feature: domain Description: Exo_endo_phos_2 Location: 1070-1406 bp Feature: domain Description: Exo_endo_phos_2 Location: 1070-1406 bp Feature: domain Description: RVT_1 Location: 2279-2567 bp Feature: domain Description: RVT_1 Location: 2 2 79-2 567 bp Feature: gene Location: 2699-2833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Exo_endo_phos_2 (pfam14529), RVT_1 (pfam00078)

Seq: VWQP01000129.1 Pseudomonas aeruginosa strain L6 L6_L1.R1.clean_(paired)_contig_129, whole genome shotgun sequence (1438 bp)
Overview 1 RT 1: 152-557 bp Neighborhood of RT #1 [152, 1435] RVT-GII Feature: gene Location: 152-1435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176-557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176-557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VWQP01000157.1 Pseudomonas aeruginosa strain L6 L6_L1.R1.clean_(paired)_contig_157, whole genome shotgun sequence (363 bp)
Overview 1 RT 1: 14-341 bp Neighborhood of RT #1 [14, 361] RVT-CRISPR-like Feature: gene Location: 14-361 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 143-341 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 14 3-34 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQP01000018.1 Pseudomonas aeruginosa strain L6 L6_L1.R1.clean_(paired)_contig_18, whole genome shotgun sequence (597806 bp)
Overview 1 RT 1: 481469-487328 bp Neighborhood of RT #1 [481469, 487328] conj_PilL KOG0389 SF2_C_SNF RVT_N RVT-GII YkfC HNHc DEXHc_Snf Feature: gene Location: 481469-481993 bp Feature: domain Description: conj_PilL Location: 481577-481886 bp Feature: domain Description: conj_PilL Location: 4815 77-481886 bp Feature: gene Location: 482207-483574 bp Feature: domain Description: KOG0389 Location: 482339-482468 bp Feature: domain Description: KOG0389 Location: 482339-482468 bp Feature: domain Description: SF2_C_SNF Location: 483014-483410 bp Feature: domain Description: SF2_C_SNF Location: 483014-483410 bp Feature: gene Location: 483669-485174 bp Feature: domain Description: RVT_N Location: 483672-483774 bp Feature: domain Description: RVT_N Location: 483672-483774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483819-484461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483819-484461 bp Feature: domain Description: YkfC Location: 484461-484770 bp Feature: domain Description: YkfC Location: 484461-484770 bp Feature: domain Description: HNHc Note: nucleases Location: 484965-485127 bp Feature: domain Description: HNHc Note: nucleases Location: 484965 -485 127 bp Feature: gene Location: 485966-486886 bp Feature: domain Description: DEXHc_Snf Location: 486185-486440 bp Feature: domain Description: DEXHc_Snf Location: 486185 -486440 bp Feature: gene Location: 487023-487328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_PilL (TIGR03748), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: VWQP01000194.1 Pseudomonas aeruginosa strain L6 L6_L1.R1.clean_(paired)_contig_194, whole genome shotgun sequence (362 bp)
Overview 1 RT 1: 2-281 bp Neighborhood of RT #1 [2, 361] RVT-CRISPR-like Feature: gene Location: 2-361 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5-281 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 5-281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: VWQP01000230.1 Pseudomonas aeruginosa strain L6 L6_L1.R1.clean_(paired)_contig_230, whole genome shotgun sequence (404 bp)
Overview 1 RT 1: 2-365 bp Neighborhood of RT #1 [2, 403] RVT-CRISPR-like Feature: gene Location: 2-403 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 230-365 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 230-365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR