myRT

myRT report for GCA_008632235.1_ASM863223v1

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Seq: VWSY01000001.1 [Clostridium] symbiosum strain LT0011 NODE_1_length_3271684_cov_105.736103, whole genome shotgun sequence (3271684 bp)
Overview 1 RT 1: 64999-70101 bp 2 RT 2: 486538-489267 bp 3 RT 3: 734634-737575 bp 4 RT 4: 1391102-1396133 bp 5 RT 5: 2969744-2976473 bp 6 RT 6: 3249216-3253959 bp Neighborhood of RT #1 [64999, 70103] MviM MviM LysR RVT-Retrons YuiF Neighborhood of RT #2 [486538, 489344] RVT-DGRs Avd_like Neighborhood of RT #3 [734634, 737575] 7tmA_UII-R RVT-DGRs Neighborhood of RT #4 [1391102, 1396133] MhpC RVT-GII GIIM M14_ASTE_ASPA-like Neighborhood of RT #5 [2969744, 2976514] DctM DctQ RVT-GII GIIM MATE_SpoVB_like FeS_nifS Neighborhood of RT #6 [3249216, 3253959] DUF2313 RVT-DGRs Feature: gene Location: 64999-66183 bp Feature: domain Description: MviM Location: 65020-65317 bp Feature: domain Description: MviM Location: 65020-6531 7 bp Feature: domain Description: MviM Location: 65392-66175 bp Feature: domain Description: MviM Location: 65392-661 75 bp Feature: gene Location: 66505-67449 bp Feature: domain Description: LysR Location: 66544-67402 bp Feature: domain Description: LysR Location: 66544-67402 bp Feature: gene Location: 67497-68483 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67662-68217 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67662-6821 7 bp Feature: gene Location: 68511-68723 bp Feature: gene Location: 68781-70103 bp Feature: domain Description: YuiF Location: 68802-70101 bp Feature: domain Description: YuiF Location: 68802-701 01 bp Feature: gene Location: 486538-486777 bp Feature: gene Location: 486905-487234 bp Feature: gene Location: 487357-488520 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 487561-488293 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 487561 -488293 bp Feature: gene Location: 488534-488863 bp Feature: gene Location: 488895-489344 bp Feature: domain Description: Avd_like Location: 488961-489267 bp Feature: domain Description: Avd_like Location: 488961 -489267 bp Feature: gene Location: 734634-735023 bp Feature: domain Description: 7tmA_UII-R Location: 734646-734871 bp Feature: domain Description: 7tmA_UII-R Location: 734646-734871 bp Feature: gene Location: 735030-735587 bp Feature: gene Location: 735541-736665 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 735748-736477 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 735748-736477 bp Feature: gene Location: 736717-736851 bp Feature: gene Location: 737354-737575 bp Feature: gene Location: 1391102-1391992 bp Feature: domain Description: MhpC Location: 1391123-1391915 bp Feature: domain Description: MhpC Location: 1 391 1 23-1 391 91 5 bp Feature: gene Location: 1392093-1392563 bp Feature: gene Location: 1392920-1394218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1393178-1393865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3931 78-1 393865 bp Feature: domain Description: GIIM Note: maturase Location: 1393943-1394150 bp Feature: domain Description: GIIM Note: maturase Location: 1 393943-1 3941 50 bp Feature: gene Location: 1394657-1395724 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 1395113-1395719 bp Feature: domain Description: M1 4_ASTE_ASPA-like Location: 1 3951 1 3-1 39571 9 bp Feature: gene Location: 1395801-1396133 bp Feature: gene Location: 2969744-2970232 bp Feature: domain Description: DctM Location: 2969753-2970227 bp Feature: domain Description: DctM Location: 2969753-2970227 bp Feature: gene Location: 2970225-2971511 bp Feature: domain Description: DctQ Location: 2970372-2971503 bp Feature: domain Description: DctQ Location: 2970372-2971 503 bp Feature: gene Location: 2972015-2973406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2972330-2972954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2972330-2972954 bp Feature: domain Description: GIIM Note: maturase Location: 2973011-2973224 bp Feature: domain Description: GIIM Note: maturase Location: 297301 1 -2973224 bp Feature: gene Location: 2973497-2974999 bp Feature: domain Description: MATE_SpoVB_like Location: 2973530-2974787 bp Feature: domain Description: MATE_SpoVB_like Location: 2973530-2974787 bp Feature: gene Location: 2975321-2976514 bp Feature: domain Description: FeS_nifS Location: 2975336-2976473 bp Feature: domain Description: FeS_nifS Location: 2975336-2976473 bp Feature: gene Location: 3249216-3250010 bp Feature: domain Description: DUF2313 Location: 3249234-3249591 bp Feature: domain Description: DUF231 3 Location: 3249234-3249591 bp Feature: gene Location: 3250025-3251830 bp Feature: gene Location: 3252115-3253407 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3252409-3253186 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3252409-32531 86 bp Feature: gene Location: 3253649-3253783 bp Feature: gene Location: 3253783-3253959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), LysR (COG0583), RVT-Retrons, YuiF (COG2056), RVT-DGRs, Avd_like (cd16376), 7tmA_UII-R (cd14999), MhpC (COG0596), RVT-GII, GIIM (pfam08388)
M14_ASTE_ASPA-like (cd06910), DctM (pfam06808), DctQ (pfam04290), MATE_SpoVB_like (cd13124), FeS_nifS (TIGR03402), DUF2313 (pfam10076)

Seq: VWSY01000002.1 [Clostridium] symbiosum strain LT0011 NODE_2_length_1273853_cov_94.730452, whole genome shotgun sequence (1273853 bp)
Overview 1 RT 1: 981957-988198 bp Neighborhood of RT #1 [981957, 988206] PRK06827 RVT-GII GIIM cyano_FeS_chp PRK00093 Feature: gene Location: 981957-983171 bp Feature: domain Description: PRK06827 Location: 981984-983130 bp Feature: domain Description: PRK0682 7 Location: 981984-983130 bp Feature: gene Location: 983571-983732 bp Feature: gene Location: 984046-985344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984304-984991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984304-984991 bp Feature: domain Description: GIIM Note: maturase Location: 985069-985276 bp Feature: domain Description: GIIM Note: maturase Location: 985069-9852 76 bp Feature: gene Location: 985463-986815 bp Feature: domain Description: cyano_FeS_chp Location: 985487-986738 bp Feature: domain Description: cyano_FeS_chp Location: 985487-986738 bp Feature: gene Location: 986872-988206 bp Feature: domain Description: PRK00093 Location: 986887-988198 bp Feature: domain Description: PRK00093 Location: 986887-988198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06827 (phosphoribosylpyrophosphate synthetase; Provisional), RVT-GII, GIIM (pfam08388), cyano_FeS_chp (TIGR03279), PRK00093 (GTP-binding protein Der; Reviewed)

Seq: VWSY01000003.1 [Clostridium] symbiosum strain LT0011 NODE_3_length_526672_cov_97.431607, whole genome shotgun sequence (526672 bp)
Overview 1 RT 1: 239390-246356 bp Neighborhood of RT #1 [239390, 246356] HepA RVT-GII GIIM Feature: gene Location: 239390-242635 bp Feature: domain Description: HepA Location: 241157-242627 bp Feature: domain Description: HepA Location: 241157-242627 bp Feature: gene Location: 242826-242987 bp Feature: gene Location: 243301-244599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243559-244246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243 559-244246 bp Feature: domain Description: GIIM Note: maturase Location: 244324-244531 bp Feature: domain Description: GIIM Note: maturase Location: 2443 24-24453 1 bp Feature: gene Location: 244669-244932 bp Feature: gene Location: 245799-246356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HepA (COG0553), RVT-GII, GIIM (pfam08388)