myRT

myRT report for GCA_008632335.1_ASM863233v1

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Seq: VWXX01000013.1 Thiohalocapsa marina strain DSM 19078 NODE_13_length_92159_cov_28.9553, whole genome shotgun sequence (92159 bp)
Overview 1 RT 1: 65331-71320 bp Neighborhood of RT #1 [65331, 71346] PIN_VapC-like PRK06467 RVT-GII GIIM PDDEXK_2 PDDEXK_2 T_den_put_tspse Feature: gene Location: 65331-65903 bp Feature: domain Description: PIN_VapC-like Location: 65415-65808 bp Feature: domain Description: PIN_VapC-like Location: 6541 5-65808 bp Feature: gene Location: 66002-67432 bp Feature: domain Description: PRK06467 Location: 66029-67430 bp Feature: domain Description: PRK06467 Location: 66029-67430 bp Feature: gene Location: 68045-69289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68246-68900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68246-68900 bp Feature: domain Description: GIIM Note: maturase Location: 68975-69188 bp Feature: domain Description: GIIM Note: maturase Location: 68975-691 88 bp Feature: gene Location: 69997-70197 bp Feature: gene Location: 70282-71346 bp Feature: domain Description: PDDEXK_2 Location: 70318-70789 bp Feature: domain Description: PDDEXK_2 Location: 7031 8-70789 bp Feature: domain Description: PDDEXK_2 Location: 70912-71107 bp Feature: domain Description: PDDEXK_2 Location: 7091 2-71 1 07 bp Feature: domain Description: T_den_put_tspse Location: 71173-71320 bp Feature: domain Description: T_den_put_tspse Location: 71 1 73-71 320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC-like (cd18715), PRK06467 (dihydrolipoamide dehydrogenase; Reviewed), RVT-GII, GIIM (pfam08388), PDDEXK_2 (pfam12784), T_den_put_tspse (TIGR01784)

Seq: VWXX01000031.1 Thiohalocapsa marina strain DSM 19078 NODE_31_length_48651_cov_28.8162, whole genome shotgun sequence (48651 bp)
Overview 1 RT 1: 5829-14134 bp Neighborhood of RT #1 [5829, 14134] COG0610 COG1479 COG3586 RVT-AbiP2 Feature: gene Location: 5829-9026 bp Feature: domain Description: COG0610 Location: 5844-8931 bp Feature: domain Description: COG0610 Location: 5844-8931 bp Feature: gene Location: 9026-11128 bp Feature: domain Description: COG1479 Location: 9029-10355 bp Feature: domain Description: COG1479 Location: 902 9-10355 bp Feature: domain Description: COG3586 Location: 10802-11102 bp Feature: domain Description: COG3586 Location: 10802 -11102 bp Feature: gene Location: 11217-12758 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 11679-12135 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 11679-12 135 bp Feature: gene Location: 12989-13120 bp Feature: gene Location: 13781-14134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), COG1479 (Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains ), COG3586 (Predicted transport protein ), RVT-AbiP2

Seq: VWXX01000054.1 Thiohalocapsa marina strain DSM 19078 NODE_54_length_12898_cov_41.652, whole genome shotgun sequence (12898 bp)
Overview 1 RT 1: 136-10173 bp Neighborhood of RT #1 [136, 10217] Avd_like DUF1566 RVT-DGRs MutS_I INT_RitA_C_like Avd_like DUF1566 RVT-DGRs MutS_I Zn_Tnp_IS91 Y2_Tnp recomb_XerD Feature: gene Location: 136-573 bp Feature: domain Description: Avd_like Location: 163-472 bp Feature: domain Description: Avd_like Location: 163 -472 bp Feature: gene Location: 713-862 bp Feature: domain Description: DUF1566 Location: 728-851 bp Feature: domain Description: DUF1566 Location: 728-851 bp Feature: gene Location: 903-2369 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1029-1698 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1029-1698 bp Feature: domain Description: MutS_I Location: 2010-2253 bp Feature: domain Description: MutS_I Location: 2010-2253 bp Feature: gene Location: 2550-3179 bp Feature: domain Description: INT_RitA_C_like Location: 2634-3165 bp Feature: domain Description: INT_RitA_C_like Location: 263 4-3 165 bp Feature: gene Location: 3608-4684 bp Feature: gene Location: 6026-6463 bp Feature: domain Description: Avd_like Location: 6053-6362 bp Feature: domain Description: Avd_like Location: 6053 -63 62 bp Feature: gene Location: 6603-6752 bp Feature: domain Description: DUF1566 Location: 6618-6741 bp Feature: domain Description: DUF1566 Location: 6618-6741 bp Feature: gene Location: 6793-8259 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6919-7588 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6919-7588 bp Feature: domain Description: MutS_I Location: 7900-8143 bp Feature: domain Description: MutS_I Location: 7900-8143 bp Feature: gene Location: 8687-9898 bp Feature: domain Description: Zn_Tnp_IS91 Location: 8720-8993 bp Feature: domain Description: Zn_Tnp_IS91 Location: 8720-8993 bp Feature: domain Description: Y2_Tnp Location: 9119-9680 bp Feature: domain Description: Y2_Tnp Location: 9119-9680 bp Feature: gene Location: 9906-10217 bp Feature: domain Description: recomb_XerD Location: 9924-10173 bp Feature: domain Description: recomb_XerD Location: 9924-10173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs, MutS_I (pfam01624), INT_RitA_C_like (cd01188), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), recomb_XerD (TIGR02225)