myRT

myRT report for GCA_008632835.1_ASM863283v1

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Seq: VWRJ01000021.1 Klebsiella pneumoniae strain P2 P2_L3.R1.clean_(paired)_contig_21, whole genome shotgun sequence (13709 bp)
Overview 1 RT 1: 2778-6381 bp Neighborhood of RT #1 [2778, 6506] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2778-3035 bp Feature: gene Location: 3066-3341 bp Feature: gene Location: 3915-5582 bp Feature: RT Description: RVT_N Location: 3963-4200 bp Feature: RT Description: RVT_N Location: 3963-4200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4251-4893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4251 -4893 bp Feature: domain Description: GIIM Note: maturase Location: 4944-5178 bp Feature: domain Description: GIIM Note: maturase Location: 4944-51 78 bp Feature: domain Description: HNHc Note: nucleases Location: 5388-5547 bp Feature: domain Description: HNHc Note: nucleases Location: 5388-5547 bp Feature: gene Location: 5896-6087 bp Feature: gene Location: 6084-6506 bp Feature: domain Description: DUF1380 Location: 6087-6381 bp Feature: domain Description: DUF1 380 Location: 6087-6381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: VWRJ01000003.1 Klebsiella pneumoniae strain P2 P2_L3.R1.clean_(paired)_contig_3, whole genome shotgun sequence (23843 bp)
Overview 1 RT 1: 3175-6445 bp Neighborhood of RT #1 [3175, 6459] RVT-GII PRK10276 Feature: gene Location: 3175-3390 bp Feature: gene Location: 3657-3887 bp Feature: gene Location: 4121-5632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4526-5240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452 6-52 40 bp Feature: gene Location: 5683-5916 bp Feature: gene Location: 6034-6459 bp Feature: domain Description: PRK10276 Location: 6037-6445 bp Feature: domain Description: PRK102 76 Location: 6037-6445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: VWRJ01000072.1 Klebsiella pneumoniae strain P2 P2_L3.R1.clean_(paired)_contig_72, whole genome shotgun sequence (33652 bp)
Overview 1 RT 1: 9914-15721 bp Neighborhood of RT #1 [9914, 16251] AAA_15 RVT-Retrons STKc_PknB_like Feature: gene Location: 9914-10219 bp Feature: gene Location: 11098-13374 bp Feature: domain Description: AAA_15 Location: 11131-12139 bp Feature: domain Description: AAA_15 Location: 1113 1-1213 9 bp Feature: gene Location: 13489-14589 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13672-14200 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 672-14200 bp Feature: gene Location: 14842-15078 bp Feature: gene Location: 15148-16251 bp Feature: domain Description: STKc_PknB_like Location: 15280-15721 bp Feature: domain Description: STKc_PknB_like Location: 15280-15721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, STKc_PknB_like (cd14014)

Seq: VWRJ01000075.1 Klebsiella pneumoniae strain P2 P2_L3.R1.clean_(paired)_contig_75, whole genome shotgun sequence (2010 bp)
Overview 1 RT 1: 466-1561 bp Neighborhood of RT #1 [466, 1953] RVT-GII Feature: gene Location: 466-1953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871-1561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII