myRT

myRT report for GCA_008634555.1_ASM863455v1

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Seq: SIZQ01000031.1 Klebsiella pneumoniae strain SHK072 Scaffold31, whole genome shotgun sequence (41443 bp)
Overview 1 RT 1: 2388-8113 bp Neighborhood of RT #1 [2388, 8331] FimC FimD RVT-UG4 Integrase_1 Feature: gene Location: 2388-3116 bp Feature: domain Description: FimC Location: 2436-3099 bp Feature: domain Description: FimC Location: 2436-3099 bp Feature: gene Location: 3148-5757 bp Feature: domain Description: FimD Location: 3205-5746 bp Feature: domain Description: FimD Location: 3205-5746 bp Feature: gene Location: 5757-6998 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 6165-6609 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 61 65-6609 bp Feature: gene Location: 6995-7834 bp Feature: gene Location: 7891-8331 bp Feature: domain Description: Integrase_1 Location: 7897-8113 bp Feature: domain Description: Integrase_1 Location: 7897-81 1 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835)

Seq: SIZQ01000048.1 Klebsiella pneumoniae strain SHK072 Scaffold48, whole genome shotgun sequence (9334 bp)
Overview 1 RT 1: 1-4549 bp Neighborhood of RT #1 [1, 4549] PRK15417 Arr-ms RVT-GII GIIM N6_acetyl_AAC6 Feature: gene Location: 1-897 bp Feature: domain Description: PRK15417 Location: 4-898 bp Feature: domain Description: PRK15417 Location: 4-898 bp Feature: gene Location: 1070-1522 bp Feature: domain Description: Arr-ms Location: 1130-1436 bp Feature: domain Description: Arr-ms Location: 1130-1436 bp Feature: gene Location: 1603-2856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795-2 419 bp Feature: domain Description: GIIM Note: maturase Location: 2458-2677 bp Feature: domain Description: GIIM Note: maturase Location: 2 458-2 677 bp Feature: gene Location: 3577-4131 bp Feature: domain Description: N6_acetyl_AAC6 Location: 3580-4129 bp Feature: domain Description: N6_acetyl_AAC6 Location: 3580-412 9 bp Feature: gene Location: 4124-4549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15417 (integron integrase), Arr-ms (pfam12120), RVT-GII, GIIM (pfam08388), N6_acetyl_AAC6 (TIGR04431)