myRT

myRT report for GCA_008634585.1_ASM863458v1

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Seq: SIZT01000035.1 Klebsiella pneumoniae strain SHK128 Scaffold35, whole genome shotgun sequence (41124 bp)
Overview 1 RT 1: 33006-38932 bp Neighborhood of RT #1 [33006, 38949] Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 33006-33446 bp Feature: domain Description: Integrase_1 Location: 33012-33228 bp Feature: domain Description: Integrase_1 Location: 3301 2-33228 bp Feature: gene Location: 33503-34342 bp Feature: gene Location: 34339-35580 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34747-35191 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34747-351 91 bp Feature: gene Location: 35580-38189 bp Feature: domain Description: FimD Location: 35637-38178 bp Feature: domain Description: FimD Location: 35637-381 78 bp Feature: gene Location: 38221-38949 bp Feature: domain Description: FimC Location: 38269-38932 bp Feature: domain Description: FimC Location: 38269-38932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: SIZT01000048.1 Klebsiella pneumoniae strain SHK128 Scaffold48, whole genome shotgun sequence (9322 bp)
Overview 1 RT 1: 1-4537 bp Neighborhood of RT #1 [1, 4537] PRK15417 Arr-ms RVT-GII GIIM N6_acetyl_AAC6 Feature: gene Location: 1-885 bp Feature: domain Description: PRK15417 Location: 4-886 bp Feature: domain Description: PRK15417 Location: 4-886 bp Feature: gene Location: 1058-1510 bp Feature: domain Description: Arr-ms Location: 1118-1424 bp Feature: domain Description: Arr-ms Location: 1118-142 4 bp Feature: gene Location: 1591-2844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783-2 407 bp Feature: domain Description: GIIM Note: maturase Location: 2446-2665 bp Feature: domain Description: GIIM Note: maturase Location: 2 446-2 665 bp Feature: gene Location: 3565-4119 bp Feature: domain Description: N6_acetyl_AAC6 Location: 3568-4117 bp Feature: domain Description: N6_acetyl_AAC6 Location: 3568-4117 bp Feature: gene Location: 4112-4537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15417 (integron integrase), Arr-ms (pfam12120), RVT-GII, GIIM (pfam08388), N6_acetyl_AAC6 (TIGR04431)