myRT

myRT report for GCA_008634595.1_ASM863459v1

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Seq: SIZU01000033.1 Klebsiella pneumoniae strain SHK140 Scaffold33, whole genome shotgun sequence (41135 bp)
Overview 1 RT 1: 33002-38928 bp Neighborhood of RT #1 [33002, 38945] Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 33002-33442 bp Feature: domain Description: Integrase_1 Location: 33008-33224 bp Feature: domain Description: Integrase_1 Location: 33008-33224 bp Feature: gene Location: 33499-34338 bp Feature: gene Location: 34335-35576 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34743-35187 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34743-351 87 bp Feature: gene Location: 35576-38185 bp Feature: domain Description: FimD Location: 35633-38174 bp Feature: domain Description: FimD Location: 35633-381 74 bp Feature: gene Location: 38217-38945 bp Feature: domain Description: FimC Location: 38265-38928 bp Feature: domain Description: FimC Location: 38265-38928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: SIZU01000044.1 Klebsiella pneumoniae strain SHK140 Scaffold44, whole genome shotgun sequence (9322 bp)
Overview 1 RT 1: 1-4537 bp Neighborhood of RT #1 [1, 4537] PRK15417 Arr-ms RVT-GII GIIM N6_acetyl_AAC6 Feature: gene Location: 1-885 bp Feature: domain Description: PRK15417 Location: 4-886 bp Feature: domain Description: PRK15417 Location: 4-886 bp Feature: gene Location: 1058-1510 bp Feature: domain Description: Arr-ms Location: 1118-1424 bp Feature: domain Description: Arr-ms Location: 1118-142 4 bp Feature: gene Location: 1591-2844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783-2 407 bp Feature: domain Description: GIIM Note: maturase Location: 2446-2665 bp Feature: domain Description: GIIM Note: maturase Location: 2 446-2 665 bp Feature: gene Location: 3565-4119 bp Feature: domain Description: N6_acetyl_AAC6 Location: 3568-4117 bp Feature: domain Description: N6_acetyl_AAC6 Location: 3568-4117 bp Feature: gene Location: 4112-4537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15417 (integron integrase), Arr-ms (pfam12120), RVT-GII, GIIM (pfam08388), N6_acetyl_AAC6 (TIGR04431)