myRT

myRT report for GCA_008634755.1_ASM863475v1

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Seq: SIZM01000029.1 Klebsiella pneumoniae strain SHK032 Scaffold29, whole genome shotgun sequence (41443 bp)
Overview 1 RT 1: 33113-39039 bp Neighborhood of RT #1 [33113, 39056] Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 33113-33553 bp Feature: domain Description: Integrase_1 Location: 33119-33335 bp Feature: domain Description: Integrase_1 Location: 331 1 9-33335 bp Feature: gene Location: 33610-34449 bp Feature: gene Location: 34446-35687 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34854-35298 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34854-35298 bp Feature: gene Location: 35687-38296 bp Feature: domain Description: FimD Location: 35744-38285 bp Feature: domain Description: FimD Location: 35744-38285 bp Feature: gene Location: 38328-39056 bp Feature: domain Description: FimC Location: 38376-39039 bp Feature: domain Description: FimC Location: 38376-39039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: SIZM01000042.1 Klebsiella pneumoniae strain SHK032 Scaffold42, whole genome shotgun sequence (9334 bp)
Overview 1 RT 1: 4883-9332 bp Neighborhood of RT #1 [4883, 9331] N6_acetyl_AAC6 RVT-GII GIIM Arr-ms PRK15417 Feature: gene Location: 4883-5116 bp Feature: gene Location: 5204-5758 bp Feature: domain Description: N6_acetyl_AAC6 Location: 5207-5756 bp Feature: domain Description: N6_acetyl_AAC6 Location: 52 07-5756 bp Feature: gene Location: 6479-7732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6671-7295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6671-72 95 bp Feature: domain Description: GIIM Note: maturase Location: 7334-7553 bp Feature: domain Description: GIIM Note: maturase Location: 7334-7553 bp Feature: gene Location: 7813-8265 bp Feature: domain Description: Arr-ms Location: 7873-8179 bp Feature: domain Description: Arr-ms Location: 7873-8179 bp Feature: gene Location: 8438-9331 bp Feature: domain Description: PRK15417 Location: 8441-9332 bp Feature: domain Description: PRK15417 Location: 8441-9332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_acetyl_AAC6 (TIGR04431), RVT-GII, GIIM (pfam08388), Arr-ms (pfam12120), PRK15417 (integron integrase)