myRT

myRT report for GCA_008667845.1_ASM866784v1

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Seq: RQDI01000306.1 Clostridia bacterium isolate S11A.meta.bin_12 k141_24459, whole genome shotgun sequence (4661 bp)
Overview 1 RT 1: 3-4575 bp Neighborhood of RT #1 [3, 4658] HTH_17 RVT-GII GIIM DDE_Tnp_1_2 Feature: gene Location: 3-173 bp Feature: domain Description: HTH_17 Location: 21-135 bp Feature: domain Description: HTH_1 7 Location: 21 -1 35 bp Feature: gene Location: 305-2158 bp Feature: gene Location: 2562-3956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880-3504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2880-3504 bp Feature: domain Description: GIIM Note: maturase Location: 3561-3783 bp Feature: domain Description: GIIM Note: maturase Location: 3561 -3783 bp Feature: gene Location: 3989-4162 bp Feature: gene Location: 4446-4658 bp Feature: domain Description: DDE_Tnp_1_2 Location: 4452-4575 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 4452-4575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), DDE_Tnp_1_2 (pfam13586)

Seq: RQDI01000069.1 Clostridia bacterium isolate S11A.meta.bin_12 k141_40154, whole genome shotgun sequence (9025 bp)
Overview 1 RT 1: 3-9004 bp Neighborhood of RT #1 [3, 9024] RVT-GII HNHc COG4646 RVT-GII GIIM COG4646 Feature: gene Location: 3-305 bp Feature: gene Location: 496-2379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-1537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-1537 bp Feature: domain Description: HNHc Note: nucleases Location: 2083-2242 bp Feature: domain Description: HNHc Note: nucleases Location: 2 083-2 2 42 bp Feature: gene Location: 2757-2927 bp Feature: gene Location: 3086-4045 bp Feature: domain Description: COG4646 Location: 3089-3650 bp Feature: domain Description: COG4646 Location: 3089-3650 bp Feature: gene Location: 4220-6145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4544-5258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4544-52 58 bp Feature: domain Description: GIIM Note: maturase Location: 5369-5570 bp Feature: domain Description: GIIM Note: maturase Location: 5369-5570 bp Feature: gene Location: 6853-9024 bp Feature: domain Description: COG4646 Location: 7006-9004 bp Feature: domain Description: COG4646 Location: 7006-9004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HNHc (smart00507), GIIM (pfam08388)

Seq: RQDI01000129.1 Clostridia bacterium isolate S11A.meta.bin_12 k141_77050, whole genome shotgun sequence (9400 bp)
Overview 1 RT 1: 4659-9249 bp Neighborhood of RT #1 [4659, 9249] RVT-GII YkfC GIIM BglX Feature: gene Location: 4659-4823 bp Feature: gene Location: 4888-5049 bp Feature: gene Location: 5069-6280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5387-5537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 87-553 7 bp Feature: domain Description: YkfC Location: 5537-5759 bp Feature: domain Description: YkfC Location: 553 7-5759 bp Feature: domain Description: GIIM Note: maturase Location: 5849-6071 bp Feature: domain Description: GIIM Note: maturase Location: 5849-6071 bp Feature: gene Location: 6633-9017 bp Feature: domain Description: BglX Location: 7329-8319 bp Feature: domain Description: BglX Location: 73 29-83 19 bp Feature: gene Location: 8902-9249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YkfC (COG3344), GIIM (pfam08388), BglX (COG1472)