myRT

myRT report for GCA_008668215.1_ASM866821v1

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Seq: RQCQ01000187.1 Clostridia bacterium isolate S10B.meta.bin_4 k141_103731, whole genome shotgun sequence (47266 bp)
Overview 1 RT 1: 39654-44581 bp Neighborhood of RT #1 [39654, 44589] Avd_like RVT-DGRs PIN_LabA-like_N_1 PurR Feature: gene Location: 39654-40124 bp Feature: domain Description: Avd_like Location: 39702-40035 bp Feature: domain Description: Avd_like Location: 39702-40035 bp Feature: gene Location: 40149-40307 bp Feature: gene Location: 40338-41564 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40674-41364 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40674-41 364 bp Feature: gene Location: 41904-43262 bp Feature: domain Description: PIN_LabA-like_N_1 Location: 42690-42918 bp Feature: domain Description: PIN_LabA-like_N_1 Location: 42690-4291 8 bp Feature: gene Location: 43471-44589 bp Feature: domain Description: PurR Location: 43579-44581 bp Feature: domain Description: PurR Location: 43579-44581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, PIN_LabA-like_N_1 (cd11297), PurR (COG1609)

Seq: RQCQ01000025.1 Clostridia bacterium isolate S10B.meta.bin_4 k141_106264, whole genome shotgun sequence (34419 bp)
Overview 1 RT 1: 9283-13636 bp Neighborhood of RT #1 [9283, 13701] PHA02517 DUF3899 RVT-GII GIIM AppF AppF Feature: gene Location: 9283-9819 bp Feature: domain Description: PHA02517 Location: 9292-9796 bp Feature: domain Description: PHA02 517 Location: 92 92 -9796 bp Feature: gene Location: 10060-10476 bp Feature: domain Description: DUF3899 Location: 10204-10456 bp Feature: domain Description: DUF3899 Location: 102 04-10456 bp Feature: gene Location: 10542-11975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10860-11484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10860-11484 bp Feature: domain Description: GIIM Note: maturase Location: 11544-11766 bp Feature: domain Description: GIIM Note: maturase Location: 11544-11766 bp Feature: gene Location: 12224-12388 bp Feature: gene Location: 12523-13701 bp Feature: domain Description: AppF Location: 12538-12868 bp Feature: domain Description: AppF Location: 12 538-12 868 bp Feature: domain Description: AppF Location: 13012-13636 bp Feature: domain Description: AppF Location: 13012 -13636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3899 (pfam13038), RVT-GII, GIIM (pfam08388), AppF (COG4608), PHA02517 (putative transposase OrfB; Reviewed)

Seq: RQCQ01000076.1 Clostridia bacterium isolate S10B.meta.bin_4 k141_14518, whole genome shotgun sequence (3615 bp)
Overview 1 RT 1: 1345-3605 bp Neighborhood of RT #1 [1345, 3613] RVT-DGRs ChiA1_BD Feature: gene Location: 1345-1662 bp Feature: gene Location: 1673-1981 bp Feature: gene Location: 2067-3014 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2343-2958 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23 43 -2958 bp Feature: gene Location: 3194-3613 bp Feature: domain Description: ChiA1_BD Location: 3482-3605 bp Feature: domain Description: ChiA1_BD Location: 3 482-3 605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ChiA1_BD (cd12214)

Seq: RQCQ01000039.1 Clostridia bacterium isolate S10B.meta.bin_4 k141_87063, whole genome shotgun sequence (2510 bp)
Overview 1 RT 1: 218-2509 bp Neighborhood of RT #1 [218, 2508] RVT-DGRs ChiA1_BD ChtBD3 Feature: gene Location: 218-646 bp Feature: gene Location: 769-963 bp Feature: gene Location: 1122-1967 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1128-1815 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1128-1815 bp Feature: gene Location: 1999-2508 bp Feature: domain Description: ChiA1_BD Location: 2287-2410 bp Feature: domain Description: ChiA1_BD Location: 2287-24 10 bp Feature: domain Description: ChtBD3 Location: 2470-2509 bp Feature: domain Description: ChtBD3 Location: 24 70-2509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ChiA1_BD (cd12214), ChtBD3 (smart00495)

Seq: RQCQ01000104.1 Clostridia bacterium isolate S10B.meta.bin_4 k141_87687, whole genome shotgun sequence (6795 bp)
Overview 1 RT 1: 2-3530 bp Neighborhood of RT #1 [2, 3530] TF_Zn_Ribbon RVT-GII HNHc Feature: gene Location: 2-511 bp Feature: domain Description: TF_Zn_Ribbon Location: 44-104 bp Feature: domain Description: TF_Zn_Ribbon Location: 44-104 bp Feature: gene Location: 679-2595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1015-1753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1015 -175 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2332-2470 bp Feature: domain Description: HNHc Note: nucleases Location: 2332-2470 bp Feature: gene Location: 2661-2867 bp Feature: gene Location: 2991-3530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)