myRT

myRT report for GCA_008669205.1_ASM866920v1

Download annotations/find similar RTs

Seq: RQAB01000082.1 Ruminococcus faecis isolate S08A.meta.bin_2 k141_10429, whole genome shotgun sequence (20066 bp)
Overview 1 RT 1: 13000-20065 bp Neighborhood of RT #1 [13000, 20064] SpaA CollagenBindB SpaA RVT-GII Feature: gene Location: 13000-19131 bp Feature: domain Description: SpaA Location: 17461-17656 bp Feature: domain Description: SpaA Location: 1 7461 -1 7656 bp Feature: domain Description: CollagenBindB Location: 17830-18058 bp Feature: domain Description: CollagenBindB Location: 1 7830-1 8058 bp Feature: domain Description: SpaA Location: 18247-18502 bp Feature: domain Description: SpaA Location: 1 8247-1 8502 bp Feature: gene Location: 19174-19584 bp Feature: gene Location: 19789-20064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19999-20065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9999-20065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpaA (pfam17802), CollagenBindB (cl15753), RVT-GII

Seq: RQAB01000111.1 Ruminococcus faecis isolate S08A.meta.bin_2 k141_18008, whole genome shotgun sequence (9592 bp)
Overview 1 RT 1: 2-2805 bp Neighborhood of RT #1 [2, 2816] RVT-GII HTH_30 IscR HDGYP Feature: gene Location: 2-553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-2 99 bp Feature: domain Description: HTH_30 Location: 356-512 bp Feature: domain Description: HTH_30 Location: 356-512 bp Feature: gene Location: 905-1225 bp Feature: gene Location: 1356-2816 bp Feature: domain Description: IscR Location: 1359-1761 bp Feature: domain Description: IscR Location: 1359-1761 bp Feature: domain Description: HDGYP Location: 2061-2805 bp Feature: domain Description: HDGYP Location: 2 061-2 805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_30 (pfam13556), IscR (TIGR02010), HDGYP (COG2206)

Seq: RQAB01000083.1 Ruminococcus faecis isolate S08A.meta.bin_2 k141_37381, whole genome shotgun sequence (52056 bp)
Overview 1 RT 1: 49250-51964 bp Neighborhood of RT #1 [49250, 52053] HTH_ARSR RVT-GII WrbA Feature: gene Location: 49250-49546 bp Feature: domain Description: HTH_ARSR Location: 49280-49484 bp Feature: domain Description: HTH_ARSR Location: 49280-49484 bp Feature: gene Location: 49602-49796 bp Feature: gene Location: 49878-51173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50133-50823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5013 3 -50823 bp Feature: gene Location: 51287-51436 bp Feature: gene Location: 51676-52053 bp Feature: domain Description: WrbA Location: 51691-51964 bp Feature: domain Description: WrbA Location: 51691-51964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-GII, WrbA (COG0655)

Seq: RQAB01000007.1 Ruminococcus faecis isolate S08A.meta.bin_2 k141_37610, whole genome shotgun sequence (3223 bp)
Overview 1 RT 1: 137-3164 bp Neighborhood of RT #1 [137, 3220] TraG-D_C RVT-GII GIIM RVT-GII PRK13780 Feature: gene Location: 137-1006 bp Feature: domain Description: TraG-D_C Location: 227-590 bp Feature: domain Description: TraG-D_C Location: 227-590 bp Feature: gene Location: 1081-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1084-1321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1084 -1321 bp Feature: domain Description: GIIM Note: maturase Location: 1402-1627 bp Feature: domain Description: GIIM Note: maturase Location: 14 02-1627 bp Feature: gene Location: 1771-2370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2062-2368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2062-2368 bp Feature: gene Location: 2462-2656 bp Feature: gene Location: 2972-3220 bp Feature: domain Description: PRK13780 Location: 3044-3164 bp Feature: domain Description: PRK13780 Location: 304 4 -3164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, GIIM (pfam08388), PRK13780 (phosphocarrier protein HPr; Provisional)

Seq: RQAB01000114.1 Ruminococcus faecis isolate S08A.meta.bin_2 k141_58375, whole genome shotgun sequence (23429 bp)
Overview 1 RT 1: 18785-23334 bp Neighborhood of RT #1 [18785, 23342] COG3666 DDE_Tnp_1_6 RVT-CRISPR Cas1_I-II-III Feature: gene Location: 18785-19852 bp Feature: domain Description: COG3666 Location: 18845-18947 bp Feature: domain Description: COG3666 Location: 18845 -18947 bp Feature: domain Description: DDE_Tnp_1_6 Location: 19415-19796 bp Feature: domain Description: DDE_Tnp_1_6 Location: 19415 -19796 bp Feature: gene Location: 20021-20374 bp Feature: gene Location: 21462-23342 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 21672-22254 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 21672-2225 4 bp Feature: domain Description: Cas1_I-II-III Location: 22404-23334 bp Feature: domain Description: Cas1_I-II-III Location: 22404-23334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: RQAB01000057.1 Ruminococcus faecis isolate S08A.meta.bin_2 k141_9196, whole genome shotgun sequence (7119 bp)
Overview 1 RT 1: 3476-6727 bp Neighborhood of RT #1 [3476, 7077] VirD4 DinB RVT-GII Feature: gene Location: 3476-4849 bp Feature: domain Description: VirD4 Location: 3554-4322 bp Feature: domain Description: VirD4 Location: 3554-4322 bp Feature: gene Location: 5018-5536 bp Feature: domain Description: DinB Location: 5021-5522 bp Feature: domain Description: DinB Location: 5021-5522 bp Feature: gene Location: 5665-7077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6037-6727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 037-6 727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), DinB (pfam05163), RVT-GII