myRT

myRT report for GCA_008670945.1_ASM867094v1

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Seq: RQAW01000089.1 Ruminococcus faecis isolate S08C.meta.bin_3 k141_21754, whole genome shotgun sequence (11959 bp)
Overview 1 RT 1: 126-2797 bp Neighborhood of RT #1 [126, 2832] RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 126-1928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1 209 bp Feature: domain Description: Intron_maturas2 Location: 1365-1584 bp Feature: domain Description: Intron_maturas2 Location: 1 365-1 584 bp Feature: domain Description: HNHc Note: nucleases Location: 1758-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 1 758-1 908 bp Feature: gene Location: 1901-2377 bp Feature: gene Location: 2470-2832 bp Feature: domain Description: Relaxase Location: 2500-2797 bp Feature: domain Description: Relaxase Location: 2500-2797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432)

Seq: RQAW01000045.1 Ruminococcus faecis isolate S08C.meta.bin_3 k141_24568, whole genome shotgun sequence (20065 bp)
Overview 1 RT 1: 19173-20064 bp Neighborhood of RT #1 [19173, 20063] RVT-GII Feature: gene Location: 19173-19583 bp Feature: gene Location: 19658-19801 bp Feature: gene Location: 19788-20063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19998-20064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19998-2 0064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RQAW01000081.1 Ruminococcus faecis isolate S08C.meta.bin_3 k141_29457, whole genome shotgun sequence (53009 bp)
Overview 1 RT 1: 49250-52063 bp Neighborhood of RT #1 [49250, 52200] HTH_ARSR RVT-GII WrbA Feature: gene Location: 49250-49546 bp Feature: domain Description: HTH_ARSR Location: 49280-49484 bp Feature: domain Description: HTH_ARSR Location: 49280-49484 bp Feature: gene Location: 49602-49796 bp Feature: gene Location: 49878-51173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50133-50823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5013 3 -50823 bp Feature: gene Location: 51287-51436 bp Feature: gene Location: 51676-52200 bp Feature: domain Description: WrbA Location: 51679-52063 bp Feature: domain Description: WrbA Location: 51679-52063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-GII, WrbA (COG0655)

Seq: RQAW01000085.1 Ruminococcus faecis isolate S08C.meta.bin_3 k141_44172, whole genome shotgun sequence (3309 bp)
Overview 1 RT 1: 2-3308 bp Neighborhood of RT #1 [2, 3308] KOG1000 RVT-GII Feature: gene Location: 2-439 bp Feature: domain Description: KOG1000 Location: 14-251 bp Feature: domain Description: KOG1000 Location: 14 -251 bp Feature: gene Location: 577-2490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 895-1621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 895-1621 bp Feature: gene Location: 2654-2800 bp Feature: gene Location: 3177-3308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII

Seq: RQAW01000100.1 Ruminococcus faecis isolate S08C.meta.bin_3 k141_47818, whole genome shotgun sequence (17598 bp)
Overview 1 RT 1: 2-2805 bp Neighborhood of RT #1 [2, 2816] RVT-GII HTH_30 IscR HDGYP Feature: gene Location: 2-553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74-299 bp Feature: domain Description: HTH_30 Location: 356-512 bp Feature: domain Description: HTH_30 Location: 35 6-5 12 bp Feature: gene Location: 905-1225 bp Feature: gene Location: 1356-2816 bp Feature: domain Description: IscR Location: 1359-1761 bp Feature: domain Description: IscR Location: 135 9-1761 bp Feature: domain Description: HDGYP Location: 2061-2805 bp Feature: domain Description: HDGYP Location: 2061-2805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_30 (pfam13556), IscR (TIGR02010), HDGYP (COG2206)