myRT

myRT report for GCA_008679235.1_ASM867923v1

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Seq: NANN01000001.1 Firmicutes bacterium isolate LMAG:100 MEG_100_1, whole genome shotgun sequence (2639692 bp)
Overview 1 RT 1: 285598-290485 bp 2 RT 2: 676161-681794 bp 3 RT 3: 976929-980495 bp 4 RT 4: 1243608-1248564 bp 5 RT 5: 1750599-1756436 bp 6 RT 6: 2362378-2366508 bp 7 RT 7: 2590812-2594316 bp Neighborhood of RT #1 [285598, 291030] NorV PRK06242 NapF RVT-GII GIIM Cadherin-like Neighborhood of RT #2 [676161, 681802] MATE_MepA_like RVT-GII GIIM MATE_NorM_like YurZ YurZ Neighborhood of RT #3 [976929, 980518] RVT-GII GIIM MFS_MefA_like Neighborhood of RT #4 [1243608, 1248572] FGE-sulfatase Avd_like RVT-DGRs CwlA CW_7 CW_7 CW_7 Neighborhood of RT #5 [1750599, 1756714] sufB MTHFS_bact RVT-GII GIIM M56_BlaR1_MecR1_like Neighborhood of RT #6 [2362378, 2366579] RVT-GII GIIM spxA Neighborhood of RT #7 [2590812, 2594321] Zn_Tnp_IS91 RVT-GII GIIM YotD Rubrerythrin_like Feature: gene Location: 285598-286809 bp Feature: domain Description: NorV Location: 285607-286729 bp Feature: domain Description: NorV Location: 285607-286729 bp Feature: gene Location: 286856-287704 bp Feature: domain Description: PRK06242 Location: 287024-287348 bp Feature: domain Description: PRK06242 Location: 287024-287348 bp Feature: domain Description: NapF Location: 287444-287633 bp Feature: domain Description: NapF Location: 287444-287633 bp Feature: gene Location: 287836-289182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288118-288733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881 1 8-288733 bp Feature: domain Description: GIIM Note: maturase Location: 288793-289024 bp Feature: domain Description: GIIM Note: maturase Location: 288793-289024 bp Feature: gene Location: 289292-289609 bp Feature: gene Location: 289798-291030 bp Feature: domain Description: Cadherin-like Location: 290248-290485 bp Feature: domain Description: Cadherin-like Location: 290248-290485 bp Feature: gene Location: 676161-677537 bp Feature: domain Description: MATE_MepA_like Location: 676200-677481 bp Feature: domain Description: MATE_MepA_like Location: 676200-677481 bp Feature: gene Location: 677692-678009 bp Feature: gene Location: 678095-679441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678377-678992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 678377-678992 bp Feature: domain Description: GIIM Note: maturase Location: 679052-679283 bp Feature: domain Description: GIIM Note: maturase Location: 679052-679283 bp Feature: gene Location: 679718-681088 bp Feature: domain Description: MATE_NorM_like Location: 679793-681071 bp Feature: domain Description: MATE_NorM_like Location: 679793-681 071 bp Feature: gene Location: 681107-681802 bp Feature: domain Description: YurZ Location: 681134-681419 bp Feature: domain Description: YurZ Location: 681 1 34-681 41 9 bp Feature: domain Description: YurZ Location: 681527-681794 bp Feature: domain Description: YurZ Location: 681 527-681 794 bp Feature: gene Location: 976929-977072 bp Feature: gene Location: 977077-977394 bp Feature: gene Location: 977504-978850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977786-978401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977786-978401 bp Feature: domain Description: GIIM Note: maturase Location: 978461-978692 bp Feature: domain Description: GIIM Note: maturase Location: 978461 -978692 bp Feature: gene Location: 978986-979126 bp Feature: gene Location: 979274-980518 bp Feature: domain Description: MFS_MefA_like Location: 979316-980495 bp Feature: domain Description: MFS_MefA_like Location: 97931 6-980495 bp Feature: gene Location: 1243608-1244678 bp Feature: domain Description: FGE-sulfatase Location: 1243836-1244175 bp Feature: domain Description: FGE-sulfatase Location: 1 243836-1 2441 75 bp Feature: gene Location: 1244819-1245331 bp Feature: domain Description: Avd_like Location: 1244861-1245170 bp Feature: domain Description: Avd_like Location: 1 244861 -1 2451 70 bp Feature: gene Location: 1246042-1247196 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1246252-1247014 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 246252-1 24701 4 bp Feature: gene Location: 1247285-1247623 bp Feature: gene Location: 1247625-1248572 bp Feature: domain Description: CwlA Location: 1247628-1248126 bp Feature: domain Description: CwlA Location: 1 247628-1 2481 26 bp Feature: domain Description: CW_7 Location: 1248141-1248258 bp Feature: domain Description: CW_7 Location: 1 2481 41 -1 248258 bp Feature: domain Description: CW_7 Location: 1248303-1248417 bp Feature: domain Description: CW_7 Location: 1 248303-1 24841 7 bp Feature: domain Description: CW_7 Location: 1248450-1248564 bp Feature: domain Description: CW_7 Location: 1 248450-1 248564 bp Feature: gene Location: 1750599-1751996 bp Feature: domain Description: sufB Location: 1750629-1751967 bp Feature: domain Description: sufB Location: 1 750629-1 751 967 bp Feature: gene Location: 1751996-1752529 bp Feature: domain Description: MTHFS_bact Location: 1752005-1752503 bp Feature: domain Description: MTHFS_bact Location: 1 752005-1 752503 bp Feature: gene Location: 1753404-1754750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753686-1754301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 753686-1 754301 bp Feature: domain Description: GIIM Note: maturase Location: 1754361-1754592 bp Feature: domain Description: GIIM Note: maturase Location: 1 754361 -1 754592 bp Feature: gene Location: 1754860-1755177 bp Feature: gene Location: 1755599-1756714 bp Feature: domain Description: M56_BlaR1_MecR1_like Location: 1755878-1756436 bp Feature: domain Description: M56_BlaR1 _MecR1 _like Location: 1 755878-1 756436 bp Feature: gene Location: 2362378-2362722 bp Feature: gene Location: 2363840-2363974 bp Feature: gene Location: 2364294-2365640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2364576-2365191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2364576-23651 91 bp Feature: domain Description: GIIM Note: maturase Location: 2365251-2365482 bp Feature: domain Description: GIIM Note: maturase Location: 2365251 -2365482 bp Feature: gene Location: 2365750-2366067 bp Feature: gene Location: 2366136-2366579 bp Feature: domain Description: spxA Location: 2366139-2366508 bp Feature: domain Description: spxA Location: 23661 39-2366508 bp Feature: gene Location: 2590812-2591153 bp Feature: gene Location: 2591321-2591527 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2591357-2591510 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2591 357-2591 51 0 bp Feature: gene Location: 2591923-2593269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2592205-2592820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2592205-2592820 bp Feature: domain Description: GIIM Note: maturase Location: 2592880-2593111 bp Feature: domain Description: GIIM Note: maturase Location: 2592880-25931 1 1 bp Feature: gene Location: 2593379-2593696 bp Feature: gene Location: 2593770-2594321 bp Feature: domain Description: YotD Location: 2593785-2593881 bp Feature: domain Description: YotD Location: 2593785-2593881 bp Feature: domain Description: Rubrerythrin_like Location: 2593947-2594316 bp Feature: domain Description: Rubrerythrin_like Location: 2593947-259431 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NorV (COG0426), PRK06242 (flavodoxin; Provisional), NapF (COG1145), RVT-GII, GIIM (pfam08388), Cadherin-like (pfam12733), MATE_MepA_like (cd13143), MATE_NorM_like (cd13137), YurZ (COG0599), MFS_MefA_like (cd06173)
FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, CwlA (COG5632), CW_7 (pfam08230), sufB (TIGR01980), MTHFS_bact, M56_BlaR1_MecR1_like (cd07341), spxA (PRK13344), Zn_Tnp_IS91 (pfam14319)
YotD (COG1592), Rubrerythrin_like (cd01046)