myRT

myRT report for GCA_008679395.1_ASM867939v1

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Seq: NANH01000010.1 Bacteroides vulgatus isolate LMAG:94 MEG_94_10, whole genome shotgun sequence (177489 bp)
Overview 1 RT 1: 99266-104008 bp Neighborhood of RT #1 [99266, 104019] NVEALA DUF1573 RVT-GII GIIM NVEALA CadC1 Feature: gene Location: 99266-99514 bp Feature: domain Description: NVEALA Location: 99275-99446 bp Feature: domain Description: NVEALA Location: 99275-99446 bp Feature: gene Location: 99756-100466 bp Feature: domain Description: DUF1573 Location: 100176-100458 bp Feature: domain Description: DUF1 573 Location: 1 001 76-1 00458 bp Feature: gene Location: 100581-101987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100923-101541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00923-1 01 541 bp Feature: domain Description: GIIM Note: maturase Location: 101598-101799 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 598-1 01 799 bp Feature: gene Location: 102546-102767 bp Feature: domain Description: NVEALA Location: 102558-102717 bp Feature: domain Description: NVEALA Location: 1 02558-1 0271 7 bp Feature: gene Location: 103021-104019 bp Feature: domain Description: CadC1 Location: 103723-104008 bp Feature: domain Description: CadC1 Location: 1 03723-1 04008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NVEALA (pfam14055), CadC1 (COG3710), DUF1573 (pfam07610)

Seq: NANH01000012.1 Bacteroides vulgatus isolate LMAG:94 MEG_94_12, whole genome shotgun sequence (287735 bp)
Overview 1 RT 1: 1-7231 bp Neighborhood of RT #1 [1, 7263] DUF4369 TlpA_like_family RVT-GII GIIM GT35_Glycogen_Phosphorylase-like GT3_GSY2-like GT3_GSY2-like Feature: gene Location: 1-852 bp Feature: domain Description: DUF4369 Location: 22-106 bp Feature: domain Description: DUF4369 Location: 2 2 -106 bp Feature: domain Description: TlpA_like_family Location: 454-805 bp Feature: domain Description: TlpA_like_family Location: 454-805 bp Feature: gene Location: 1101-2507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443-2061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1443-2 061 bp Feature: domain Description: GIIM Note: maturase Location: 2118-2319 bp Feature: domain Description: GIIM Note: maturase Location: 2 118-2 319 bp Feature: gene Location: 3000-5564 bp Feature: domain Description: GT35_Glycogen_Phosphorylase-like Location: 3087-5391 bp Feature: domain Description: GT35_Glycogen_Phosphorylase-like Location: 3087-5391 bp Feature: gene Location: 5593-7263 bp Feature: domain Description: GT3_GSY2-like Location: 5623-6631 bp Feature: domain Description: GT3_GSY2 -like Location: 562 3-6631 bp Feature: domain Description: GT3_GSY2-like Location: 6703-7231 bp Feature: domain Description: GT3_GSY2 -like Location: 6703-72 31 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4369 (pfam14289), TlpA_like_family (cd02966), GT3_GSY2-like (cd03793)

Seq: NANH01000013.1 Bacteroides vulgatus isolate LMAG:94 MEG_94_13, whole genome shotgun sequence (449269 bp)
Overview 1 RT 1: 64796-70656 bp Neighborhood of RT #1 [64796, 70802] Tag IS285 RVT-GII GIIM Adenine_glyco SusD Feature: gene Location: 64796-65311 bp Feature: domain Description: Tag Location: 64862-65222 bp Feature: domain Description: Tag Location: 64862-65222 bp Feature: gene Location: 65334-66578 bp Feature: domain Description: IS285 Location: 65502-66552 bp Feature: domain Description: IS285 Location: 65502-66552 bp Feature: gene Location: 66589-67995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66931-67549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6693 1-67549 bp Feature: domain Description: GIIM Note: maturase Location: 67606-67807 bp Feature: domain Description: GIIM Note: maturase Location: 67606-67807 bp Feature: gene Location: 68588-68716 bp Feature: domain Description: Adenine_glyco Location: 68591-68699 bp Feature: domain Description: Adenine_glyco Location: 68591-68699 bp Feature: gene Location: 69129-70802 bp Feature: domain Description: SusD Location: 69252-70656 bp Feature: domain Description: SusD Location: 69252-70656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tag (COG2818), IS285 (COG3328), RVT-GII, GIIM (pfam08388), Adenine_glyco (pfam03352), SusD (NF033071)

Seq: NANH01000016.1 Bacteroides vulgatus isolate LMAG:94 MEG_94_16, whole genome shotgun sequence (157017 bp)
Overview 1 RT 1: 126852-131716 bp Neighborhood of RT #1 [126852, 131751] RVT-GII GIIM RplQ PRK05182 Feature: gene Location: 126852-127391 bp Feature: gene Location: 127510-127935 bp Feature: gene Location: 128381-129787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128723-129341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128723-12934 1 bp Feature: domain Description: GIIM Note: maturase Location: 129398-129599 bp Feature: domain Description: GIIM Note: maturase Location: 129398-129599 bp Feature: gene Location: 130267-130755 bp Feature: domain Description: RplQ Location: 130270-130615 bp Feature: domain Description: RplQ Location: 130270-130615 bp Feature: gene Location: 130759-131751 bp Feature: domain Description: PRK05182 Location: 130777-131716 bp Feature: domain Description: PRK05182 Location: 130777-131716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RplQ (COG0203), PRK05182 (DNA-directed RNA polymerase subunit alpha; Provisional)

Seq: NANH01000017.1 Bacteroides vulgatus isolate LMAG:94 MEG_94_17, whole genome shotgun sequence (357223 bp)
Overview 1 RT 1: 3451-9591 bp Neighborhood of RT #1 [3451, 9623] YadS RpoE RVT-GII GIIM OadA1 Biotin_lipoyl_2 DUF1460 Feature: gene Location: 3451-4065 bp Feature: domain Description: YadS Location: 3460-4057 bp Feature: domain Description: YadS Location: 3460-405 7 bp Feature: gene Location: 4224-4727 bp Feature: domain Description: RpoE Location: 4242-4719 bp Feature: domain Description: RpoE Location: 4242-4719 bp Feature: gene Location: 5211-6617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5553-6171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 5 3-6171 bp Feature: domain Description: GIIM Note: maturase Location: 6228-6429 bp Feature: domain Description: GIIM Note: maturase Location: 6228-6429 bp Feature: gene Location: 6838-8613 bp Feature: domain Description: OadA1 Location: 6862-8275 bp Feature: domain Description: OadA1 Location: 6862-8275 bp Feature: domain Description: Biotin_lipoyl_2 Location: 8503-8602 bp Feature: domain Description: Biotin_lipoyl_2 Location: 85 03-8602 bp Feature: gene Location: 8739-9623 bp Feature: domain Description: DUF1460 Location: 8925-9591 bp Feature: domain Description: DUF1460 Location: 8925 -95 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YadS (COG2860), RpoE (COG3343), RVT-GII, GIIM (pfam08388), OadA1 (COG5016), Biotin_lipoyl_2 (pfam13533), DUF1460 (pfam07313)

Seq: NANH01000022.1 Bacteroides vulgatus isolate LMAG:94 MEG_94_22, whole genome shotgun sequence (175865 bp)
Overview 1 RT 1: 108856-121705 bp Neighborhood of RT #1 [108856, 121705] OMP_RagA_SusC SusD RVT-GII GIIM YfmG Sialidase_non-viral Feature: gene Location: 108856-112128 bp Feature: domain Description: OMP_RagA_SusC Location: 108940-112120 bp Feature: domain Description: OMP_RagA_SusC Location: 108940-112120 bp Feature: gene Location: 112161-114326 bp Feature: domain Description: SusD Location: 112482-113784 bp Feature: domain Description: SusD Location: 112482-113784 bp Feature: gene Location: 114807-116213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115149-115767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115149-11576 7 bp Feature: domain Description: GIIM Note: maturase Location: 115824-116025 bp Feature: domain Description: GIIM Note: maturase Location: 115824-116 025 bp Feature: gene Location: 116627-118615 bp Feature: domain Description: YfmG Location: 116702-117377 bp Feature: domain Description: YfmG Location: 116 702-117377 bp Feature: domain Description: Sialidase_non-viral Location: 117536-118571 bp Feature: domain Description: Sialidase_non-viral Location: 117536 -118571 bp Feature: gene Location: 119159-121705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), SusD (NF033071), RVT-GII, GIIM (pfam08388), YfmG (COG1262), Sialidase_non-viral (cd15482)

Seq: NANH01000003.1 Bacteroides vulgatus isolate LMAG:94 MEG_94_3, whole genome shotgun sequence (91690 bp)
Overview 1 RT 1: 29414-35632 bp Neighborhood of RT #1 [29414, 35649] MgtE DUF349 DUF349 DUF349 DUF349 DUF349 RVT-GII GIIM RsfS Feature: gene Location: 29414-30754 bp Feature: domain Description: MgtE Location: 29429-30743 bp Feature: domain Description: MgtE Location: 29429-307 43 bp Feature: gene Location: 31015-32823 bp Feature: domain Description: DUF349 Location: 31330-31540 bp Feature: domain Description: DUF349 Location: 31330-31540 bp Feature: domain Description: DUF349 Location: 31555-31771 bp Feature: domain Description: DUF349 Location: 31555-317 7 1 bp Feature: domain Description: DUF349 Location: 31786-32020 bp Feature: domain Description: DUF349 Location: 317 86-32020 bp Feature: domain Description: DUF349 Location: 32035-32251 bp Feature: domain Description: DUF349 Location: 32035-32251 bp Feature: domain Description: DUF349 Location: 32263-32485 bp Feature: domain Description: DUF349 Location: 32263-32485 bp Feature: gene Location: 33008-34414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33350-33968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33350-33968 bp Feature: domain Description: GIIM Note: maturase Location: 34025-34226 bp Feature: domain Description: GIIM Note: maturase Location: 34025-34226 bp Feature: gene Location: 34855-35010 bp Feature: gene Location: 35290-35649 bp Feature: domain Description: RsfS Location: 35299-35632 bp Feature: domain Description: RsfS Location: 35299-35632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MgtE (pfam01769), DUF349 (pfam03993), RVT-GII, GIIM (pfam08388), RsfS (pfam02410)

Seq: NANH01000009.1 Bacteroides vulgatus isolate LMAG:94 MEG_94_9, whole genome shotgun sequence (399063 bp)
Overview 1 RT 1: 159248-168752 bp 2 RT 2: 190152-197776 bp Neighborhood of RT #1 [159248, 168772] pgk FecR RVT-GII GIIM STN OMP_RagA_SusC SusD-like Neighborhood of RT #2 [190152, 198009] OmpA RVT-GII GIIM TPR TPR TPR_12 HTH_ARAC DsbD Feature: gene Location: 159248-160501 bp Feature: domain Description: pgk Location: 159251-160493 bp Feature: domain Description: pgk Location: 159251-160493 bp Feature: gene Location: 160725-161651 bp Feature: domain Description: FecR Location: 160929-161616 bp Feature: domain Description: FecR Location: 160929-161616 bp Feature: gene Location: 161804-163210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162146-162764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162146-162764 bp Feature: domain Description: GIIM Note: maturase Location: 162821-163022 bp Feature: domain Description: GIIM Note: maturase Location: 1628 21-163022 bp Feature: gene Location: 163724-167140 bp Feature: domain Description: STN Location: 163940-164087 bp Feature: domain Description: STN Location: 163940-16408 7 bp Feature: domain Description: OMP_RagA_SusC Location: 164135-167135 bp Feature: domain Description: OMP_RagA_SusC Location: 164135-167135 bp Feature: gene Location: 167159-168772 bp Feature: domain Description: SusD-like Location: 167261-168752 bp Feature: domain Description: SusD-like Location: 167261-168 752 bp Feature: gene Location: 190152-191342 bp Feature: domain Description: OmpA Location: 190950-191280 bp Feature: domain Description: OmpA Location: 190950-19128 0 bp Feature: gene Location: 191654-191818 bp Feature: gene Location: 191982-193388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192324-192942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192324-192942 bp Feature: domain Description: GIIM Note: maturase Location: 192999-193200 bp Feature: domain Description: GIIM Note: maturase Location: 192999-193200 bp Feature: gene Location: 194092-195843 bp Feature: domain Description: TPR Location: 194188-194416 bp Feature: domain Description: TPR Location: 19418 8 -194416 bp Feature: domain Description: TPR Location: 194716-195007 bp Feature: domain Description: TPR Location: 194716-195007 bp Feature: domain Description: TPR_12 Location: 195055-195118 bp Feature: domain Description: TPR_12 Location: 195055-195118 bp Feature: domain Description: HTH_ARAC Location: 195562-195811 bp Feature: domain Description: HTH_ARAC Location: 195562-1958 11 bp Feature: gene Location: 195976-198009 bp Feature: domain Description: DsbD Location: 196234-197776 bp Feature: domain Description: DsbD Location: 196234-197776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pgk (PRK00073), FecR (pfam04773), RVT-GII, GIIM (pfam08388), STN (smart00965), OMP_RagA_SusC (TIGR04056), SusD-like (pfam12741), OmpA (pfam00691), TPR (smart00028), TPR_12 (pfam13424)
HTH_ARAC (smart00342), DsbD (pfam02683)