myRT

myRT report for GCA_008679515.1_ASM867951v1

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Seq: NAMZ01000002.1 [Eubacterium] rectale isolate LMAG:86 MEG_86_2, whole genome shotgun sequence (273054 bp)
Overview 1 RT 1: 98550-103516 bp 2 RT 2: 248419-251534 bp Neighborhood of RT #1 [98550, 103569] RVT-GII GIIM OmpR BaeS Neighborhood of RT #2 [248419, 251563] RVT-GII GIIM PemK_toxin Feature: gene Location: 98550-99422 bp Feature: gene Location: 99570-99812 bp Feature: gene Location: 99920-101314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100238-100862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00238-1 00862 bp Feature: domain Description: GIIM Note: maturase Location: 100919-101129 bp Feature: domain Description: GIIM Note: maturase Location: 1 0091 9-1 01 1 29 bp Feature: gene Location: 101507-102199 bp Feature: domain Description: OmpR Location: 101510-102194 bp Feature: domain Description: OmpR Location: 1 01 51 0-1 021 94 bp Feature: gene Location: 102196-103569 bp Feature: domain Description: BaeS Location: 102805-103516 bp Feature: domain Description: BaeS Location: 1 02805-1 0351 6 bp Feature: gene Location: 248419-248841 bp Feature: gene Location: 248850-249233 bp Feature: gene Location: 249654-250937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249864-250479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249864-250479 bp Feature: domain Description: GIIM Note: maturase Location: 250539-250749 bp Feature: domain Description: GIIM Note: maturase Location: 250539-250749 bp Feature: gene Location: 251034-251171 bp Feature: gene Location: 251177-251563 bp Feature: domain Description: PemK_toxin Location: 251192-251534 bp Feature: domain Description: PemK_toxin Location: 251 1 92-251 534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), BaeS (COG0642), RVT-GII, GIIM (pfam08388), PemK_toxin (pfam02452)

Seq: NAMZ01000003.1 [Eubacterium] rectale isolate LMAG:86 MEG_86_3, whole genome shotgun sequence (716073 bp)
Overview 1 RT 1: 166776-176518 bp Neighborhood of RT #1 [166776, 176523] YIH1 MrcB MrcB RVT-GII GIIM amt GlnK GlnA3 Feature: gene Location: 166776-167483 bp Feature: domain Description: YIH1 Location: 166866-167421 bp Feature: domain Description: YIH1 Location: 166866-16742 1 bp Feature: gene Location: 167649-170426 bp Feature: domain Description: MrcB Location: 167709-168753 bp Feature: domain Description: MrcB Location: 167709-168753 bp Feature: domain Description: MrcB Location: 168972-170157 bp Feature: domain Description: MrcB Location: 168972 -170157 bp Feature: gene Location: 170526-171920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170844-171468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170844-171468 bp Feature: domain Description: GIIM Note: maturase Location: 171525-171735 bp Feature: domain Description: GIIM Note: maturase Location: 17152 5-171735 bp Feature: gene Location: 172440-174197 bp Feature: domain Description: amt Location: 172476-173682 bp Feature: domain Description: amt Location: 172 476-173682 bp Feature: domain Description: GlnK Location: 173853-174183 bp Feature: domain Description: GlnK Location: 173853-174183 bp Feature: gene Location: 174400-176523 bp Feature: domain Description: GlnA3 Location: 174412-176518 bp Feature: domain Description: GlnA3 Location: 174412 -176518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YIH1 (COG1739), MrcB (COG0744), RVT-GII, GIIM (pfam08388), amt (TIGR00836), GlnK (COG0347), GlnA3 (COG3968)

Seq: NAMZ01000004.1 [Eubacterium] rectale isolate LMAG:86 MEG_86_4, whole genome shotgun sequence (2116660 bp)
Overview 1 RT 1: 618847-624211 bp 2 RT 2: 711152-715584 bp 3 RT 3: 1095799-1104718 bp 4 RT 4: 1195257-1200496 bp 5 RT 5: 1450903-1456607 bp 6 RT 6: 1531377-1545187 bp 7 RT 7: 1599929-1607863 bp 8 RT 8: 1686996-1691982 bp 9 RT 9: 2034507-2042452 bp 10 RT 10: 2049277-2061461 bp Neighborhood of RT #1 [618847, 624213] DUF2225 RVT-GII GIIM PRK00509 argC Neighborhood of RT #2 [711152, 715592] Ferritin_like RVT-GII GIIM AIM24 PRK05273 Neighborhood of RT #3 [1095799, 1104741] ebgA PRK10572 RVT-GII GIIM Bgal_small_N ebgA Neighborhood of RT #4 [1195257, 1200516] PRK09261 RVT-GII GIIM ADPRase_NUDT5 NADPH_BDH Neighborhood of RT #5 [1450903, 1456612] COG3940 GH43_GsAbnA-like GH43_C RVT-GII GIIM TktA2 Neighborhood of RT #6 [1531377, 1545207] TMP_TenI PRK09355 PRK09355 RVT-GII GIIM DapB PRK05813 TypA RVT-GII GIIM PRK07590 ANTAR Neighborhood of RT #7 [1599929, 1607889] DUF4367 RimL RVT-GII GIIM RVT-GII GIIM DUF3784 Neighborhood of RT #8 [1686996, 1692002] PRK12353 RVT-GII GIIM DegQ Neighborhood of RT #9 [2034507, 2042547] MdlB MdlB RVT-GII GIIM AraC ABC_cobalt_CbiO_domain1 ABC_cobalt_CbiO_domain1 Neighborhood of RT #10 [2049277, 2061466] DUF3848 DUF3849 YtxK COG4646 KOG1000 RVT-GII GIIM menH_SHCHC menH_SHCHC Feature: gene Location: 618847-619704 bp Feature: domain Description: DUF2225 Location: 618991-619678 bp Feature: domain Description: DUF2225 Location: 618991-619678 bp Feature: gene Location: 619823-620065 bp Feature: gene Location: 620173-621567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620491-621115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620491-621115 bp Feature: domain Description: GIIM Note: maturase Location: 621172-621382 bp Feature: domain Description: GIIM Note: maturase Location: 621172-6213 82 bp Feature: gene Location: 621655-622881 bp Feature: domain Description: PRK00509 Location: 621661-622849 bp Feature: domain Description: PRK00509 Location: 621661-622849 bp Feature: gene Location: 623041-624213 bp Feature: domain Description: argC Location: 623158-624211 bp Feature: domain Description: argC Location: 623 158-624211 bp Feature: gene Location: 711152-711379 bp Feature: gene Location: 711673-712131 bp Feature: domain Description: Ferritin_like Location: 711709-712099 bp Feature: domain Description: Ferritin_like Location: 711709-712099 bp Feature: gene Location: 712233-713627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712551-713175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712551-713 175 bp Feature: domain Description: GIIM Note: maturase Location: 713232-713442 bp Feature: domain Description: GIIM Note: maturase Location: 713 23 2-713 442 bp Feature: gene Location: 714116-714796 bp Feature: domain Description: AIM24 Location: 714125-714743 bp Feature: domain Description: AIM24 Location: 714125-714743 bp Feature: gene Location: 715146-715592 bp Feature: domain Description: PRK05273 Location: 715149-715584 bp Feature: domain Description: PRK05273 Location: 715149-715584 bp Feature: gene Location: 1095799-1098834 bp Feature: domain Description: ebgA Location: 1095820-1098826 bp Feature: domain Description: ebgA Location: 1095820-1098826 bp Feature: gene Location: 1098960-1099817 bp Feature: domain Description: PRK10572 Location: 1099158-1099812 bp Feature: domain Description: PRK10572 Location: 1099158-1099812 bp Feature: gene Location: 1099893-1101287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1100211-1100835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1100211-110083 5 bp Feature: domain Description: GIIM Note: maturase Location: 1100892-1101102 bp Feature: domain Description: GIIM Note: maturase Location: 1100892-1101102 bp Feature: gene Location: 1101789-1102736 bp Feature: domain Description: Bgal_small_N Location: 1101849-1102731 bp Feature: domain Description: Bgal_small_N Location: 1101849-110273 1 bp Feature: gene Location: 1102720-1104741 bp Feature: domain Description: ebgA Location: 1102858-1104718 bp Feature: domain Description: ebgA Location: 1102858-1104718 bp Feature: gene Location: 1195257-1195445 bp Feature: gene Location: 1195621-1196652 bp Feature: domain Description: PRK09261 Location: 1195627-1196644 bp Feature: domain Description: PRK09261 Location: 1195627-1196644 bp Feature: gene Location: 1196752-1198146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1197070-1197694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1197070-1197694 bp Feature: domain Description: GIIM Note: maturase Location: 1197751-1197961 bp Feature: domain Description: GIIM Note: maturase Location: 1197751-1197961 bp Feature: gene Location: 1198641-1199180 bp Feature: domain Description: ADPRase_NUDT5 Location: 1198770-1199163 bp Feature: domain Description: ADPRase_NUDT5 Location: 1198770-1199163 bp Feature: gene Location: 1199230-1200516 bp Feature: domain Description: NADPH_BDH Location: 1199311-1200496 bp Feature: domain Description: NADPH_BDH Location: 11993 11-1200496 bp Feature: gene Location: 1450903-1451850 bp Feature: domain Description: COG3940 Location: 1450915-1451839 bp Feature: domain Description: COG3 940 Location: 1450915-145183 9 bp Feature: gene Location: 1451932-1453470 bp Feature: domain Description: GH43_GsAbnA-like Location: 1452082-1453114 bp Feature: domain Description: GH43 _GsAbnA-like Location: 1452082-1453 114 bp Feature: domain Description: GH43_C Location: 1453141-1453456 bp Feature: domain Description: GH43 _C Location: 1453 141-1453 456 bp Feature: gene Location: 1453734-1455128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1454052-1454676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1454052-1454676 bp Feature: domain Description: GIIM Note: maturase Location: 1454733-1454943 bp Feature: domain Description: GIIM Note: maturase Location: 145473 3 -1454943 bp Feature: gene Location: 1455480-1455653 bp Feature: gene Location: 1455674-1456612 bp Feature: domain Description: TktA2 Location: 1455689-1456607 bp Feature: domain Description: TktA2 Location: 1455689-1456607 bp Feature: gene Location: 1531377-1532027 bp Feature: domain Description: TMP_TenI Location: 1531401-1532004 bp Feature: domain Description: TMP_TenI Location: 153 1401-153 2004 bp Feature: gene Location: 1532111-1533082 bp Feature: domain Description: PRK09355 Location: 1532138-1532765 bp Feature: domain Description: PRK093 55 Location: 153 213 8-153 2765 bp Feature: domain Description: PRK09355 Location: 1532768-1532975 bp Feature: domain Description: PRK093 55 Location: 153 2768-153 2975 bp Feature: gene Location: 1533804-1535198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1534122-1534746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 4122-153 4746 bp Feature: domain Description: GIIM Note: maturase Location: 1534803-1535025 bp Feature: domain Description: GIIM Note: maturase Location: 153 4803 -153 5025 bp Feature: gene Location: 1535308-1535616 bp Feature: gene Location: 1535851-1536612 bp Feature: domain Description: DapB Location: 1535854-1536601 bp Feature: domain Description: DapB Location: 153 5854-153 6601 bp Feature: gene Location: 1538586-1539206 bp Feature: domain Description: PRK05813 Location: 1538589-1539201 bp Feature: domain Description: PRK05813 Location: 153 8589-153 9201 bp Feature: gene Location: 1539417-1541249 bp Feature: domain Description: TypA Location: 1539435-1541232 bp Feature: domain Description: TypA Location: 153 943 5-154123 2 bp Feature: gene Location: 1541389-1542783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1541707-1542331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1541707-15423 3 1 bp Feature: domain Description: GIIM Note: maturase Location: 1542388-1542598 bp Feature: domain Description: GIIM Note: maturase Location: 15423 88-1542598 bp Feature: gene Location: 1543287-1544501 bp Feature: domain Description: PRK07590 Location: 1543290-1544496 bp Feature: domain Description: PRK07590 Location: 1543 290-1544496 bp Feature: gene Location: 1544656-1545207 bp Feature: domain Description: ANTAR Location: 1545049-1545187 bp Feature: domain Description: ANTAR Location: 1545049-1545187 bp Feature: gene Location: 1599929-1600861 bp Feature: domain Description: DUF4367 Location: 1600544-1600850 bp Feature: domain Description: DUF43 67 Location: 1600544-1600850 bp Feature: gene Location: 1600910-1601515 bp Feature: domain Description: RimL Location: 1600937-1601237 bp Feature: domain Description: RimL Location: 160093 7-160123 7 bp Feature: gene Location: 1601595-1602878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1601805-1602420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1601805-1602420 bp Feature: domain Description: GIIM Note: maturase Location: 1602480-1602690 bp Feature: domain Description: GIIM Note: maturase Location: 1602480-1602690 bp Feature: gene Location: 1603521-1603952 bp Feature: gene Location: 1604068-1604232 bp Feature: gene Location: 1604236-1604760 bp Feature: gene Location: 1604763-1605092 bp Feature: gene Location: 1605196-1606590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605514-1606138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1605514-160613 8 bp Feature: domain Description: GIIM Note: maturase Location: 1606195-1606405 bp Feature: domain Description: GIIM Note: maturase Location: 1606195-1606405 bp Feature: gene Location: 1607104-1607331 bp Feature: gene Location: 1607569-1607889 bp Feature: domain Description: DUF3784 Location: 1607704-1607863 bp Feature: domain Description: DUF3 784 Location: 1607704-1607863 bp Feature: gene Location: 1686996-1687928 bp Feature: domain Description: PRK12353 Location: 1687005-1687926 bp Feature: domain Description: PRK123 53 Location: 1687005-1687926 bp Feature: gene Location: 1688083-1688289 bp Feature: gene Location: 1688363-1689757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688681-1689305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688681-16893 05 bp Feature: domain Description: GIIM Note: maturase Location: 1689362-1689584 bp Feature: domain Description: GIIM Note: maturase Location: 16893 62-1689584 bp Feature: gene Location: 1689867-1690175 bp Feature: gene Location: 1690407-1692002 bp Feature: domain Description: DegQ Location: 1690929-1691982 bp Feature: domain Description: DegQ Location: 1690929-1691982 bp Feature: gene Location: 2034507-2036258 bp Feature: domain Description: MdlB Location: 2034519-2036223 bp Feature: domain Description: MdlB Location: 203 4519-203 6223 bp Feature: gene Location: 2036251-2038041 bp Feature: domain Description: MdlB Location: 2036290-2037985 bp Feature: domain Description: MdlB Location: 203 6290-203 7985 bp Feature: gene Location: 2038134-2039528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038452-2039076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 8452-203 9076 bp Feature: domain Description: GIIM Note: maturase Location: 2039133-2039343 bp Feature: domain Description: GIIM Note: maturase Location: 203 913 3 -203 93 43 bp Feature: gene Location: 2040060-2040917 bp Feature: domain Description: AraC Location: 2040609-2040909 bp Feature: domain Description: AraC Location: 2040609-2040909 bp Feature: gene Location: 2041012-2042547 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 2041024-2041690 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 2041024-2041690 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 2041834-2042452 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 204183 4-2042452 bp Feature: gene Location: 2049277-2050083 bp Feature: domain Description: DUF3848 Location: 2049295-2049574 bp Feature: domain Description: DUF3 848 Location: 2049295-2049574 bp Feature: domain Description: DUF3849 Location: 2049610-2049982 bp Feature: domain Description: DUF3 849 Location: 2049610-2049982 bp Feature: gene Location: 2050085-2057629 bp Feature: domain Description: YtxK Location: 2052842-2053538 bp Feature: domain Description: YtxK Location: 2052842-2053 53 8 bp Feature: domain Description: COG4646 Location: 2053607-2056187 bp Feature: domain Description: COG4646 Location: 2053 607-2056187 bp Feature: domain Description: KOG1000 Location: 2056625-2056829 bp Feature: domain Description: KOG1000 Location: 2056625-2056829 bp Feature: gene Location: 2057724-2059118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058042-2058666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058042-2058666 bp Feature: domain Description: GIIM Note: maturase Location: 2058723-2058933 bp Feature: domain Description: GIIM Note: maturase Location: 2058723 -205893 3 bp Feature: gene Location: 2059533-2060774 bp Feature: gene Location: 2060864-2061466 bp Feature: domain Description: menH_SHCHC Location: 2060873-2061143 bp Feature: domain Description: menH_SHCHC Location: 2060873 -2061143 bp Feature: domain Description: menH_SHCHC Location: 2061272-2061461 bp Feature: domain Description: menH_SHCHC Location: 2061272-2061461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2225 (pfam09986), RVT-GII, GIIM (pfam08388), PRK00509 (argininosuccinate synthase; Provisional), argC (TIGR01850), Ferritin_like (cl00264), AIM24 (pfam01987), PRK05273 (D-tyrosyl-tRNA(Tyr) deacylase; Provisional), ebgA (PRK10340), PRK10572 (arabinose operon transcriptional regulator AraC)
Bgal_small_N (smart01038), PRK09261 (phospho-2-dehydro-3-deoxyheptonate aldolase; Validated), ADPRase_NUDT5 (cd03424), NADPH_BDH (cd08179), COG3940 (Beta-xylosidase, GH43 family ), GH43_GsAbnA-like (cd18832), GH43_C (pfam16369), TktA2 (COG3958), TMP_TenI (cd00564), PRK09355 (hydroxyethylthiazole kinase; Validated)
DapB (COG0289), PRK05813 (single-stranded DNA-binding protein; Provisional), TypA (COG1217), PRK07590 (L,L-diaminopimelate aminotransferase; Validated), ANTAR (smart01012), DUF4367 (pfam14285), RimL (COG1670), DUF3784 (pfam12650), PRK12353 (putative amino acid kinase; Reviewed), DegQ (pfam08181)
MdlB (COG1132), AraC (COG2207), ABC_cobalt_CbiO_domain1 (cd03225), DUF3848 (pfam12959), DUF3849 (pfam12960), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), menH_SHCHC (TIGR03695)

Seq: NAMZ01000005.1 [Eubacterium] rectale isolate LMAG:86 MEG_86_5, whole genome shotgun sequence (306109 bp)
Overview 1 RT 1: 271324-275248 bp Neighborhood of RT #1 [271324, 275283] HTH_XRE RVT-GII GIIM CPBP DUF4190 Gp49 Feature: gene Location: 271324-271593 bp Feature: domain Description: HTH_XRE Location: 271360-271534 bp Feature: domain Description: HTH_XRE Location: 271360-271534 bp Feature: gene Location: 271674-271916 bp Feature: gene Location: 272024-273418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 272342-272966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27234 2-272966 bp Feature: domain Description: GIIM Note: maturase Location: 273023-273233 bp Feature: domain Description: GIIM Note: maturase Location: 273023-273233 bp Feature: gene Location: 273728-274861 bp Feature: domain Description: CPBP Location: 274103-274406 bp Feature: domain Description: CPBP Location: 274 103-274 4 06 bp Feature: domain Description: DUF4190 Location: 274610-274793 bp Feature: domain Description: DUF4 190 Location: 274 610-274 793 bp Feature: gene Location: 274933-275283 bp Feature: domain Description: Gp49 Location: 274990-275248 bp Feature: domain Description: Gp4 9 Location: 274 990-27524 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), CPBP, DUF4190 (pfam13828), Gp49 (pfam05973)