myRT

myRT report for GCA_008679565.1_ASM867956v1

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Seq: NAMX01000002.1 Firmicutes bacterium isolate LMAG:84 MEG_84_2, whole genome shotgun sequence (795391 bp)
Overview 1 RT 1: 630981-635005 bp Neighborhood of RT #1 [630981, 635005] IME4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 630981-631541 bp Feature: domain Description: IME4 Location: 630993-631503 bp Feature: domain Description: IME4 Location: 630993-631 503 bp Feature: gene Location: 631552-631854 bp Feature: gene Location: 631930-633762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632194-633025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6321 94-633025 bp Feature: domain Description: Intron_maturas2 Location: 633097-633412 bp Feature: domain Description: Intron_maturas2 Location: 633097-63341 2 bp Feature: domain Description: HNHc Note: nucleases Location: 633559-633733 bp Feature: domain Description: HNHc Note: nucleases Location: 633559-633733 bp Feature: gene Location: 634007-634222 bp Feature: gene Location: 634337-635005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IME4 (COG4725), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAMX01000003.1 Firmicutes bacterium isolate LMAG:84 MEG_84_3, whole genome shotgun sequence (1109395 bp)
Overview 1 RT 1: 576675-579350 bp Neighborhood of RT #1 [576675, 579355] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 576675-576968 bp Feature: domain Description: Phage_holin_5_2 Location: 576720-576951 bp Feature: domain Description: Phage_holin_5_2 Location: 57672 0-576951 bp Feature: gene Location: 576981-577304 bp Feature: gene Location: 577323-578519 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 577512-578331 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 577512 -578331 bp Feature: gene Location: 578730-579215 bp Feature: gene Location: 579212-579355 bp Feature: domain Description: Phage_XkdX Location: 579233-579350 bp Feature: domain Description: Phage_XkdX Location: 5792 33-579350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: NAMX01000004.1 Firmicutes bacterium isolate LMAG:84 MEG_84_4, whole genome shotgun sequence (485877 bp)
Overview 1 RT 1: 452897-461500 bp Neighborhood of RT #1 [452897, 461667] RVT-GII Intron_maturas2 HNHc VirD4 Maff2 RVT-GII Intron_maturas2 HNHc PrgI Feature: gene Location: 452897-453403 bp Feature: gene Location: 453658-453924 bp Feature: gene Location: 453963-455780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454227-455046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 454227-455046 bp Feature: domain Description: Intron_maturas2 Location: 455118-455421 bp Feature: domain Description: Intron_maturas2 Location: 455118-455421 bp Feature: domain Description: HNHc Note: nucleases Location: 455601-455745 bp Feature: domain Description: HNHc Note: nucleases Location: 455601-455745 bp Feature: gene Location: 455871-457229 bp Feature: domain Description: VirD4 Location: 456045-457128 bp Feature: domain Description: VirD4 Location: 456045-457128 bp Feature: gene Location: 457446-457664 bp Feature: domain Description: Maff2 Location: 457449-457656 bp Feature: domain Description: Maff2 Location: 457449-457656 bp Feature: gene Location: 457734-458405 bp Feature: gene Location: 458520-458735 bp Feature: gene Location: 458981-460813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459245-460076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459245-460076 bp Feature: domain Description: Intron_maturas2 Location: 460148-460463 bp Feature: domain Description: Intron_maturas2 Location: 460148-460463 bp Feature: domain Description: HNHc Note: nucleases Location: 460610-460784 bp Feature: domain Description: HNHc Note: nucleases Location: 460610-460784 bp Feature: gene Location: 460889-461191 bp Feature: gene Location: 461212-461667 bp Feature: domain Description: PrgI Location: 461227-461500 bp Feature: domain Description: PrgI Location: 461227-461500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), Maff2 (pfam12750), PrgI (pfam12666)

Seq: NAMX01000005.1 Firmicutes bacterium isolate LMAG:84 MEG_84_5, whole genome shotgun sequence (773187 bp)
Overview 1 RT 1: 4018-7868 bp Neighborhood of RT #1 [4018, 7868] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4018-4206 bp Feature: gene Location: 4414-4689 bp Feature: gene Location: 4789-6621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5053-5884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5053-5884 bp Feature: domain Description: Intron_maturas2 Location: 5956-6271 bp Feature: domain Description: Intron_maturas2 Location: 5956-6271 bp Feature: domain Description: HNHc Note: nucleases Location: 6418-6592 bp Feature: domain Description: HNHc Note: nucleases Location: 64 18-6592 bp Feature: gene Location: 6867-7082 bp Feature: gene Location: 7197-7868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAMX01000006.1 Firmicutes bacterium isolate LMAG:84 MEG_84_6, whole genome shotgun sequence (209060 bp)
Overview 1 RT 1: 70063-73896 bp 2 RT 2: 130361-133263 bp Neighborhood of RT #1 [70063, 74306] DppF M14_ASTE_ASPA-like RVT-GII Cthe_2159 Neighborhood of RT #2 [130361, 133263] PHA02517 InsE RVT-GII RVT-GII PBP2_GltC_like Feature: gene Location: 70063-70857 bp Feature: domain Description: DppF Location: 70123-70843 bp Feature: domain Description: DppF Location: 70123-70843 bp Feature: gene Location: 70854-71786 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 70944-71520 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 70944-715 20 bp Feature: gene Location: 72290-72778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72608-72764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72608-72764 bp Feature: gene Location: 72889-73233 bp Feature: gene Location: 73605-74306 bp Feature: domain Description: Cthe_2159 Location: 73614-73896 bp Feature: domain Description: Cthe_215 9 Location: 73614-73896 bp Feature: gene Location: 130361-131266 bp Feature: domain Description: PHA02517 Location: 130430-131255 bp Feature: domain Description: PHA025 17 Location: 130430-13125 5 bp Feature: gene Location: 131266-131607 bp Feature: domain Description: InsE Location: 131281-131596 bp Feature: domain Description: InsE Location: 131281-1315 96 bp Feature: gene Location: 131817-132158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131901-132156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131901-13215 6 bp Feature: gene Location: 132159-132368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132162-132303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132162-132303 bp Feature: gene Location: 132391-132951 bp Feature: domain Description: PBP2_GltC_like Location: 132403-132931 bp Feature: domain Description: PBP2_GltC_like Location: 132403-132931 bp Feature: gene Location: 133081-133263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DppF (COG1124), M14_ASTE_ASPA-like (cd06910), RVT-GII, Cthe_2159 (pfam14262), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), PBP2_GltC_like (cd08434)