myRT

myRT report for GCA_008679655.1_ASM867965v1

Download annotations/find similar RTs

Seq: NAMT01000001.1 Parabacteroides distasonis isolate LMAG:80 MEG_80_1, whole genome shotgun sequence (205139 bp)
Overview 1 RT 1: 2-1786 bp 2 RT 2: 180797-186206 bp 3 RT 3: 189830-195323 bp Neighborhood of RT #1 [2, 1786] RVT-GII RVT-GII KOG4768 Neighborhood of RT #2 [180797, 186206] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 Neighborhood of RT #3 [189830, 195343] RlmJ CAP_ED RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 2-514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71-263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 -263 bp Feature: gene Location: 559-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565-931 bp Feature: gene Location: 1044-1337 bp Feature: domain Description: KOG4768 Location: 1071-1323 bp Feature: domain Description: KOG4768 Location: 1 071 -1 323 bp Feature: gene Location: 1637-1786 bp Feature: gene Location: 180797-181042 bp Feature: gene Location: 181172-182341 bp Feature: domain Description: Arm-DNA-bind_5 Location: 181205-181457 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 81 205-1 81 457 bp Feature: domain Description: Phage_int_SAM_5 Location: 181499-181814 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 81 499-1 81 81 4 bp Feature: domain Description: INTN1_C_like Location: 181856-182324 bp Feature: domain Description: INTN1 _C_like Location: 1 81 856-1 82324 bp Feature: gene Location: 182892-184700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183156-183978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 831 56-1 83978 bp Feature: domain Description: Intron_maturas2 Location: 184104-184359 bp Feature: domain Description: Intron_maturas2 Location: 1 841 04-1 84359 bp Feature: gene Location: 185007-185933 bp Feature: gene Location: 186042-186206 bp Feature: gene Location: 189830-190711 bp Feature: domain Description: RlmJ Location: 189848-190553 bp Feature: domain Description: RlmJ Location: 1 89848-1 90553 bp Feature: gene Location: 190787-191353 bp Feature: domain Description: CAP_ED Location: 190820-191138 bp Feature: domain Description: CAP_ED Location: 1 90820-1 91 1 38 bp Feature: gene Location: 191803-193611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192067-192889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 92067-1 92889 bp Feature: domain Description: Intron_maturas2 Location: 193015-193270 bp Feature: domain Description: Intron_maturas2 Location: 1 9301 5-1 93270 bp Feature: gene Location: 193911-194060 bp Feature: gene Location: 194162-195343 bp Feature: domain Description: Arm-DNA-bind_5 Location: 194198-194459 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 941 98-1 94459 bp Feature: domain Description: Phage_int_SAM_5 Location: 194501-194798 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 94501 -1 94798 bp Feature: domain Description: INTN1_C_like Location: 194852-195323 bp Feature: domain Description: INTN1 _C_like Location: 1 94852-1 95323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), Intron_maturas2 (pfam01348), RlmJ (COG2961), CAP_ED (cl00047)

Seq: NAMT01000005.1 Parabacteroides distasonis isolate LMAG:80 MEG_80_5, whole genome shotgun sequence (192442 bp)
Overview 1 RT 1: 165718-169766 bp Neighborhood of RT #1 [165718, 169783] RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 165718-165933 bp Feature: gene Location: 166014-166148 bp Feature: gene Location: 166258-168066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166522-167344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16652 2 -167344 bp Feature: domain Description: Intron_maturas2 Location: 167470-167725 bp Feature: domain Description: Intron_maturas2 Location: 167470-16772 5 bp Feature: gene Location: 168366-168515 bp Feature: gene Location: 168617-169783 bp Feature: domain Description: Arm-DNA-bind_5 Location: 168650-168902 bp Feature: domain Description: Arm-DNA-bind_5 Location: 168650-168902 bp Feature: domain Description: Phage_int_SAM_5 Location: 168941-169253 bp Feature: domain Description: Phage_int_SAM_5 Location: 168941-1692 53 bp Feature: domain Description: INTN1_C_like Location: 169298-169766 bp Feature: domain Description: INTN1_C_like Location: 1692 98-169766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: NAMT01000006.1 Parabacteroides distasonis isolate LMAG:80 MEG_80_6, whole genome shotgun sequence (546908 bp)
Overview 1 RT 1: 544260-546457 bp Neighborhood of RT #1 [544260, 546603] INTN1_C_like KOG4768 RVT-GII Intron_maturas2 Feature: gene Location: 544260-544484 bp Feature: domain Description: INTN1_C_like Location: 544263-544377 bp Feature: domain Description: INTN1_C_like Location: 544263 -5443 77 bp Feature: gene Location: 544992-545285 bp Feature: domain Description: KOG4768 Location: 545025-545271 bp Feature: domain Description: KOG4768 Location: 545025-545271 bp Feature: gene Location: 545273-546004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545276-545702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545276-545702 bp Feature: gene Location: 546013-546150 bp Feature: gene Location: 546262-546603 bp Feature: domain Description: Intron_maturas2 Location: 546268-546457 bp Feature: domain Description: Intron_maturas2 Location: 546268-546457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, Intron_maturas2 (pfam01348)

Seq: NAMT01000007.1 Parabacteroides distasonis isolate LMAG:80 MEG_80_7, whole genome shotgun sequence (516439 bp)
Overview 1 RT 1: 381737-394427 bp Neighborhood of RT #1 [381737, 394427] RVT_N RVT-GII GIIM Por_Secre_tail Feature: gene Location: 381737-386962 bp Feature: gene Location: 386964-390986 bp Feature: gene Location: 391616-393268 bp Feature: domain Description: RVT_N Location: 391670-391913 bp Feature: domain Description: RVT_N Location: 391670-391913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391958-392606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391958-392606 bp Feature: domain Description: GIIM Note: maturase Location: 392660-392891 bp Feature: domain Description: GIIM Note: maturase Location: 392660-392891 bp Feature: gene Location: 393322-393579 bp Feature: domain Description: Por_Secre_tail Location: 393406-393568 bp Feature: domain Description: Por_Secre_tail Location: 3934 06-393568 bp Feature: gene Location: 393777-394427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Por_Secre_tail (TIGR04183)

Seq: NAMT01000009.1 Parabacteroides distasonis isolate LMAG:80 MEG_80_9, whole genome shotgun sequence (1272534 bp)
Overview 1 RT 1: 314307-318826 bp 2 RT 2: 1000199-1004743 bp 3 RT 3: 1010461-1016655 bp Neighborhood of RT #1 [314307, 318826] Hypoth_Ymh RVT-AbiP2 COG1373 Neighborhood of RT #2 [1000199, 1004743] RVT-Retrons Neighborhood of RT #3 [1010461, 1016655] INTN1_C_like Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 314307-314573 bp Feature: gene Location: 314646-315440 bp Feature: domain Description: Hypoth_Ymh Location: 315063-315417 bp Feature: domain Description: Hypoth_Ymh Location: 315 063-315 417 bp Feature: gene Location: 315465-316988 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 315894-316350 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 315 894-31635 0 bp Feature: gene Location: 317047-318306 bp Feature: domain Description: COG1373 Location: 317053-318286 bp Feature: domain Description: COG1373 Location: 31705 3-318286 bp Feature: gene Location: 318497-318826 bp Feature: gene Location: 1000199-1000327 bp Feature: gene Location: 1000346-1000582 bp Feature: gene Location: 1001278-1002375 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1001497-1002118 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1001497-1002118 bp Feature: gene Location: 1002540-1003826 bp Feature: gene Location: 1003919-1004743 bp Feature: gene Location: 1010461-1010799 bp Feature: domain Description: INTN1_C_like Location: 1010626-1010758 bp Feature: domain Description: INTN1_C_like Location: 1010626-101075 8 bp Feature: gene Location: 1010841-1012097 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1010955-1011201 bp Feature: domain Description: Arm-DNA-bind_5 Location: 101095 5 -1011201 bp Feature: domain Description: Phage_int_SAM_5 Location: 1011249-1011549 bp Feature: domain Description: Phage_int_SAM_5 Location: 1011249-10115 49 bp Feature: domain Description: INTN1_C_like Location: 1011612-1012080 bp Feature: domain Description: INTN1_C_like Location: 1011612-1012080 bp Feature: gene Location: 1012648-1014456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012912-1013734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1012912-1013734 bp Feature: domain Description: Intron_maturas2 Location: 1013860-1014115 bp Feature: domain Description: Intron_maturas2 Location: 1013860-1014115 bp Feature: gene Location: 1014666-1015877 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1014693-1014936 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1014693-1014936 bp Feature: domain Description: Phage_int_SAM_5 Location: 1015026-1015278 bp Feature: domain Description: Phage_int_SAM_5 Location: 1015 026-1015 278 bp Feature: domain Description: INTN1_C_like Location: 1015332-1015809 bp Feature: domain Description: INTN1_C_like Location: 1015 332-1015 809 bp Feature: gene Location: 1015930-1016655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), RVT-AbiP2, COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-Retrons, INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), RVT-GII, Intron_maturas2 (pfam01348)