myRT

myRT report for GCA_008679665.1_ASM867966v1

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Seq: NAMR01000005.1 Clostridiales bacterium LMAG:78 MEG_78_5, whole genome shotgun sequence (874590 bp)
Overview 1 RT 1: 498179-504005 bp Neighborhood of RT #1 [498179, 504265] FlaA1 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-Retrons RES Feature: gene Location: 498179-499018 bp Feature: domain Description: FlaA1 Location: 498230-499001 bp Feature: domain Description: FlaA1 Location: 498230-499001 bp Feature: gene Location: 499093-499929 bp Feature: domain Description: DDE_Tnp_IS66 Location: 499099-499741 bp Feature: domain Description: DDE_Tnp_IS66 Location: 499099-499741 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 499759-499876 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 499759-499876 bp Feature: gene Location: 500037-501620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 500058-500658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 500058-500658 bp Feature: gene Location: 501685-502782 bp Feature: gene Location: 502844-504265 bp Feature: domain Description: RES Location: 503534-504005 bp Feature: domain Description: RES Location: 503534-504005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlaA1 (COG1086), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-Retrons, RES (smart00953)

Seq: NAMR01000006.1 Clostridiales bacterium LMAG:78 MEG_78_6, whole genome shotgun sequence (413146 bp)
Overview 1 RT 1: 313978-326145 bp Neighborhood of RT #1 [313978, 326285] PBP2_phosphate_like_1 MET17 RVT-GII TVP38 SseA sda_beta lipoamide_DH RVT-GII GIIM YhgE Feature: gene Location: 313978-314931 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 314140-314914 bp Feature: domain Description: PBP2 _phosphate_like_1 Location: 314140-314914 bp Feature: gene Location: 315079-316392 bp Feature: domain Description: MET17 Location: 315118-316387 bp Feature: domain Description: MET17 Location: 315118-316387 bp Feature: gene Location: 316734-317336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317085-317295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 317085-3172 95 bp Feature: gene Location: 317825-318511 bp Feature: domain Description: TVP38 Location: 317921-318506 bp Feature: domain Description: TVP38 Location: 31792 1-318506 bp Feature: gene Location: 318512-319453 bp Feature: domain Description: SseA Location: 318638-319442 bp Feature: domain Description: SseA Location: 318638-319442 bp Feature: gene Location: 321305-321667 bp Feature: domain Description: sda_beta Location: 321314-321650 bp Feature: domain Description: sda_beta Location: 32 1314-32 1650 bp Feature: gene Location: 321699-322475 bp Feature: domain Description: lipoamide_DH Location: 321702-322452 bp Feature: domain Description: lipoamide_DH Location: 32 1702 -32 2 452 bp Feature: gene Location: 322511-323440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322517-323081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 2 517-32 3081 bp Feature: domain Description: GIIM Note: maturase Location: 323162-323387 bp Feature: domain Description: GIIM Note: maturase Location: 32 3162 -32 3387 bp Feature: gene Location: 323503-323748 bp Feature: gene Location: 323805-326285 bp Feature: domain Description: YhgE Location: 324531-326145 bp Feature: domain Description: YhgE Location: 32 4531-32 6145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_phosphate_like_1 (cd13653), MET17 (COG2873), RVT-GII, TVP38 (COG0398), SseA (COG2897), sda_beta, lipoamide_DH (TIGR01350), GIIM (pfam08388), YhgE (COG1511)

Seq: NAMR01000007.1 Clostridiales bacterium LMAG:78 MEG_78_7, whole genome shotgun sequence (1256160 bp)
Overview 1 RT 1: 41433-49968 bp 2 RT 2: 605383-613016 bp Neighborhood of RT #1 [41433, 50147] YjiL YjiL COG3580 COG3581 RVT-GII GIIM GGGtGRT IscU Neighborhood of RT #2 [605383, 613099] TrbL AAA_10 RVT-GII AAA_10 TcpE Feature: gene Location: 41433-45677 bp Feature: domain Description: YjiL Location: 41442-41904 bp Feature: domain Description: YjiL Location: 41442-41904 bp Feature: domain Description: YjiL Location: 41913-43179 bp Feature: domain Description: YjiL Location: 41913 -43 179 bp Feature: domain Description: COG3580 Location: 43380-44427 bp Feature: domain Description: COG3 580 Location: 43 3 80-44427 bp Feature: domain Description: COG3581 Location: 44478-45672 bp Feature: domain Description: COG3 581 Location: 44478-45672 bp Feature: gene Location: 45854-46039 bp Feature: gene Location: 46472-47866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46790-47414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46790-47414 bp Feature: domain Description: GIIM Note: maturase Location: 47471-47693 bp Feature: domain Description: GIIM Note: maturase Location: 47471-47693 bp Feature: gene Location: 48404-49414 bp Feature: domain Description: GGGtGRT Location: 48416-49394 bp Feature: domain Description: GGGtGRT Location: 48416-493 94 bp Feature: gene Location: 49455-50147 bp Feature: domain Description: IscU Location: 49482-49968 bp Feature: domain Description: IscU Location: 49482-49968 bp Feature: gene Location: 605383-607593 bp Feature: domain Description: TrbL Location: 606286-606649 bp Feature: domain Description: TrbL Location: 606286-606649 bp Feature: gene Location: 607593-608438 bp Feature: domain Description: AAA_10 Location: 607596-608400 bp Feature: domain Description: AAA_10 Location: 607596-608400 bp Feature: gene Location: 608650-610476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608950-609649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608950-609649 bp Feature: gene Location: 611173-612723 bp Feature: domain Description: AAA_10 Location: 612502-612685 bp Feature: domain Description: AAA_10 Location: 612502-612685 bp Feature: gene Location: 612701-613099 bp Feature: domain Description: TcpE Location: 612719-613016 bp Feature: domain Description: TcpE Location: 612719-613 016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjiL (COG1924), COG3580 (Predicted nucleotide-binding protein, sugar kinase/HSP70/actin superfamily ), COG3581 (Predicted nucleotide-binding protein, sugar kinase/HSP70/actin superfamily ), RVT-GII, GIIM (pfam08388), GGGtGRT (pfam14057), IscU (COG0822), TrbL (pfam04610), AAA_10 (pfam12846), TcpE (pfam12648)