myRT

myRT report for GCA_008679815.1_ASM867981v1

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Seq: NAML01000001.1 Bacteroides ovatus isolate LMAG:72 MEG_72_1, whole genome shotgun sequence (162828 bp)
Overview 1 RT 1: 75504-79462 bp Neighborhood of RT #1 [75504, 79462] RVT-UG27 Feature: gene Location: 75504-76160 bp Feature: gene Location: 76204-76830 bp Feature: gene Location: 76848-78113 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 77037-77673 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 77037-77673 bp Feature: gene Location: 78436-78933 bp Feature: gene Location: 78983-79462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: NAML01000012.1 Bacteroides ovatus isolate LMAG:72 MEG_72_12, whole genome shotgun sequence (291029 bp)
Overview 1 RT 1: 222999-235539 bp Neighborhood of RT #1 [222999, 235539] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 222999-224801 bp Feature: domain Description: rpsA Location: 223068-224685 bp Feature: domain Description: rpsA Location: 2 2 3068-2 2 4685 bp Feature: gene Location: 224898-230855 bp Feature: domain Description: DUF4011 Location: 226128-226641 bp Feature: domain Description: DUF4011 Location: 2 2 612 8-2 2 6641 bp Feature: domain Description: DEXXQc_SF1 Location: 226980-227946 bp Feature: domain Description: DEXXQc_SF1 Location: 2 2 6980-2 2 7946 bp Feature: domain Description: DEXXQc_SF1 Location: 228408-229167 bp Feature: domain Description: DEXXQc_SF1 Location: 2 2 8408-2 2 9167 bp Feature: domain Description: TIGR00376 Location: 229296-229686 bp Feature: domain Description: TIGR00376 Location: 2 2 92 96-2 2 9686 bp Feature: domain Description: MTES_1575 Location: 229839-230124 bp Feature: domain Description: MTES_1575 Location: 2 2 9839-2 3012 4 bp Feature: domain Description: DUF3320 Location: 230364-230505 bp Feature: domain Description: DUF332 0 Location: 2 30364-2 30505 bp Feature: gene Location: 230857-231987 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 231178-231721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 31178-2 3172 1 bp Feature: gene Location: 232193-234382 bp Feature: gene Location: 235066-235539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: NAML01000014.1 Bacteroides ovatus isolate LMAG:72 MEG_72_14, whole genome shotgun sequence (901157 bp)
Overview 1 RT 1: 350806-356417 bp 2 RT 2: 366264-375068 bp 3 RT 3: 401227-407516 bp Neighborhood of RT #1 [350806, 356422] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4134 Neighborhood of RT #2 [366264, 375403] xerC AAA_21 RVT-GII GIIM GIIM RVT-GII AtoC TMAO_torS Neighborhood of RT #3 [401227, 407554] COG3538 RVT_N RVT-GII GIIM DUF772 DDE_Tnp_1_2 INT_RitC_C_like Feature: gene Location: 350806-353328 bp Feature: domain Description: Bac_Flav_CT_G Location: 350809-353296 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 50809-3 53 296 bp Feature: gene Location: 353369-353587 bp Feature: gene Location: 353709-355517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353973-354792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 53 973 -3 54792 bp Feature: domain Description: Intron_maturas2 Location: 354867-355194 bp Feature: domain Description: Intron_maturas2 Location: 3 54867-3 55194 bp Feature: domain Description: HNHc Note: nucleases Location: 355350-355494 bp Feature: domain Description: HNHc Note: nucleases Location: 3 553 50-3 55494 bp Feature: gene Location: 355572-355913 bp Feature: gene Location: 356126-356422 bp Feature: domain Description: DUF4134 Location: 356147-356417 bp Feature: domain Description: DUF413 4 Location: 3 56147-3 56417 bp Feature: gene Location: 366264-367319 bp Feature: domain Description: xerC Location: 366294-367209 bp Feature: domain Description: xerC Location: 3 66294-3 67209 bp Feature: gene Location: 367461-368852 bp Feature: domain Description: AAA_21 Location: 367563-368409 bp Feature: domain Description: AAA_21 Location: 3 67563 -3 68409 bp Feature: gene Location: 369310-370602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369520-370177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 69520-3 70177 bp Feature: domain Description: GIIM Note: maturase Location: 370255-370462 bp Feature: domain Description: GIIM Note: maturase Location: 3 70255-3 70462 bp Feature: gene Location: 370895-371068 bp Feature: gene Location: 371177-371683 bp Feature: domain Description: GIIM Note: maturase Location: 371291-371522 bp Feature: domain Description: GIIM Note: maturase Location: 3 71291-3 71522 bp Feature: gene Location: 371685-372488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371931-372471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7193 1-3 72471 bp Feature: gene Location: 373051-374331 bp Feature: domain Description: AtoC Location: 373054-374326 bp Feature: domain Description: AtoC Location: 3 73 054-3 743 26 bp Feature: gene Location: 374336-375403 bp Feature: domain Description: TMAO_torS Location: 374339-375068 bp Feature: domain Description: TMAO_torS Location: 3 743 3 9-3 75068 bp Feature: gene Location: 401227-402672 bp Feature: domain Description: COG3538 Location: 401374-402637 bp Feature: domain Description: COG3 53 8 Location: 4013 74-40263 7 bp Feature: gene Location: 403228-403407 bp Feature: gene Location: 403441-404931 bp Feature: domain Description: RVT_N Location: 403510-403750 bp Feature: domain Description: RVT_N Location: 403 510-403 750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403798-404443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403 798-404443 bp Feature: domain Description: GIIM Note: maturase Location: 404497-404731 bp Feature: domain Description: GIIM Note: maturase Location: 404497-40473 1 bp Feature: gene Location: 405130-406488 bp Feature: domain Description: DUF772 Location: 405319-405514 bp Feature: domain Description: DUF772 Location: 4053 19-405514 bp Feature: domain Description: DDE_Tnp_1_2 Location: 406177-406387 bp Feature: domain Description: DDE_Tnp_1_2 Location: 406177-4063 87 bp Feature: gene Location: 407399-407554 bp Feature: domain Description: INT_RitC_C_like Location: 407402-407516 bp Feature: domain Description: INT_RitC_C_like Location: 407402-407516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4134 (pfam13572), xerC (PRK01287), AAA_21 (pfam13304), GIIM (pfam08388), AtoC (COG2204), TMAO_torS (TIGR02956)
COG3538 (Meiotically up-regulated gene 157 (Mug157) protein (function unknown) ), RVT_N (pfam13655), DUF772 (pfam05598), DDE_Tnp_1_2 (pfam13586), INT_RitC_C_like (cd01182)

Seq: NAML01000002.1 Bacteroides ovatus isolate LMAG:72 MEG_72_2, whole genome shotgun sequence (1289533 bp)
Overview 1 RT 1: 475023-477747 bp Neighborhood of RT #1 [475023, 477752] DUF4134 RVT-GII GIIM DUF4133 DUF3875 Feature: gene Location: 475023-475211 bp Feature: domain Description: DUF4134 Location: 475044-475209 bp Feature: domain Description: DUF4 134 Location: 4 7504 4 -4 75209 bp Feature: gene Location: 475420-475557 bp Feature: gene Location: 475752-477020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475956-476613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 75956-4 76613 bp Feature: domain Description: GIIM Note: maturase Location: 476700-476907 bp Feature: domain Description: GIIM Note: maturase Location: 4 76700-4 76907 bp Feature: gene Location: 477171-477578 bp Feature: domain Description: DUF4133 Location: 477276-477546 bp Feature: domain Description: DUF4 133 Location: 4 77276-4 7754 6 bp Feature: gene Location: 477582-477752 bp Feature: domain Description: DUF3875 Location: 477600-477747 bp Feature: domain Description: DUF3875 Location: 4 77600-4 7774 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), DUF3875 (pfam12991)