myRT

myRT report for GCA_008679835.1_ASM867983v1

Download annotations/find similar RTs

Seq: NAMK01000002.1 Firmicutes bacterium isolate LMAG:71 MEG_71_2, whole genome shotgun sequence (145399 bp)
Overview 1 RT 1: 139971-143690 bp Neighborhood of RT #1 [139971, 143690] RVT-GII Intron_maturas2 HNHc TraG_VirD4 Feature: gene Location: 139971-140405 bp Feature: gene Location: 140728-140994 bp Feature: gene Location: 141033-142850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141297-142116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 297-1 421 1 6 bp Feature: domain Description: Intron_maturas2 Location: 142188-142491 bp Feature: domain Description: Intron_maturas2 Location: 1 421 88-1 42491 bp Feature: domain Description: HNHc Note: nucleases Location: 142671-142815 bp Feature: domain Description: HNHc Note: nucleases Location: 1 42671 -1 4281 5 bp Feature: gene Location: 142941-143405 bp Feature: domain Description: TraG_VirD4 Location: 142959-143271 bp Feature: domain Description: TraG_VirD4 Location: 1 42959-1 43271 bp Feature: gene Location: 143418-143690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG_VirD4

Seq: NAMK01000003.1 Firmicutes bacterium isolate LMAG:71 MEG_71_3, whole genome shotgun sequence (892738 bp)
Overview 1 RT 1: 552482-556143 bp Neighborhood of RT #1 [552482, 556151] RVT-GII Intron_maturas2 HNHc PrgI Feature: gene Location: 552482-553153 bp Feature: gene Location: 553268-553483 bp Feature: gene Location: 553729-555561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553993-554824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 553993-55482 4 bp Feature: domain Description: Intron_maturas2 Location: 554896-555211 bp Feature: domain Description: Intron_maturas2 Location: 554896-5552 11 bp Feature: domain Description: HNHc Note: nucleases Location: 555379-555532 bp Feature: domain Description: HNHc Note: nucleases Location: 555379-555532 bp Feature: gene Location: 555700-555939 bp Feature: gene Location: 555963-556151 bp Feature: domain Description: PrgI Location: 555978-556143 bp Feature: domain Description: PrgI Location: 555978-556143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666)

Seq: NAMK01000004.1 Firmicutes bacterium isolate LMAG:71 MEG_71_4, whole genome shotgun sequence (580077 bp)
Overview 1 RT 1: 460830-463409 bp 2 RT 2: 525948-531717 bp Neighborhood of RT #1 [460830, 463429] Phage_XkdX RVT-DGRs Phage_holin_Dp1 Neighborhood of RT #2 [525948, 531725] RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 TnpV Feature: gene Location: 460830-460973 bp Feature: domain Description: Phage_XkdX Location: 460851-460968 bp Feature: domain Description: Phage_XkdX Location: 460851-460968 bp Feature: gene Location: 461057-461464 bp Feature: gene Location: 461670-462866 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 461862-462681 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 461862-462681 bp Feature: gene Location: 462892-463227 bp Feature: gene Location: 463214-463429 bp Feature: domain Description: Phage_holin_Dp1 Location: 463223-463409 bp Feature: domain Description: Phage_holin_Dp1 Location: 463 223 -463 409 bp Feature: gene Location: 525948-526454 bp Feature: gene Location: 526709-526975 bp Feature: gene Location: 527014-528831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527278-528097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527278-528097 bp Feature: domain Description: Intron_maturas2 Location: 528169-528472 bp Feature: domain Description: Intron_maturas2 Location: 528169-528472 bp Feature: domain Description: HNHc Note: nucleases Location: 528652-528796 bp Feature: domain Description: HNHc Note: nucleases Location: 528652-528796 bp Feature: gene Location: 528922-531384 bp Feature: domain Description: T4SS-DNA_transf Location: 528940-529366 bp Feature: domain Description: T4SS-DNA_transf Location: 528940-5293 66 bp Feature: domain Description: SR_TndX_transposase Location: 529522-529951 bp Feature: domain Description: SR_TndX_transposase Location: 529522-529951 bp Feature: domain Description: Recombinase Location: 530047-530407 bp Feature: domain Description: Recombinase Location: 53 0047-53 0407 bp Feature: domain Description: Zn_ribbon_recom Location: 530452-530638 bp Feature: domain Description: Zn_ribbon_recom Location: 53 0452-53 063 8 bp Feature: domain Description: DUF4368 Location: 530914-531109 bp Feature: domain Description: DUF43 68 Location: 53 0914-53 1109 bp Feature: gene Location: 531381-531725 bp Feature: domain Description: TnpV Location: 531393-531717 bp Feature: domain Description: TnpV Location: 53 13 93 -53 1717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_Dp1 (pfam16938), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)
DUF4368 (pfam14287), TnpV (pfam14198)

Seq: NAMK01000005.1 Firmicutes bacterium isolate LMAG:71 MEG_71_5, whole genome shotgun sequence (1351512 bp)
Overview 1 RT 1: 6072-10067 bp 2 RT 2: 1263538-1267293 bp Neighborhood of RT #1 [6072, 10210] RVT-GII Intron_maturas2 HNHc LPD26 SpoVG Neighborhood of RT #2 [1263538, 1267778] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 6072-6740 bp Feature: gene Location: 6855-7070 bp Feature: gene Location: 7316-9148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7580-8411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7580-84 11 bp Feature: domain Description: Intron_maturas2 Location: 8483-8798 bp Feature: domain Description: Intron_maturas2 Location: 84 83-8798 bp Feature: domain Description: HNHc Note: nucleases Location: 8966-9119 bp Feature: domain Description: HNHc Note: nucleases Location: 8966-9119 bp Feature: gene Location: 9224-9526 bp Feature: gene Location: 9569-10210 bp Feature: domain Description: LPD26 Location: 9599-9764 bp Feature: domain Description: LPD26 Location: 9599-9764 bp Feature: domain Description: SpoVG Location: 9839-10067 bp Feature: domain Description: SpoVG Location: 9839-10067 bp Feature: gene Location: 1263538-1263807 bp Feature: gene Location: 1263912-1264466 bp Feature: gene Location: 1264655-1265878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1264919-1265645 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1264 919-126564 5 bp Feature: gene Location: 1266185-1266646 bp Feature: domain Description: Avd_like Location: 1266251-1266557 bp Feature: domain Description: Avd_like Location: 1266251-1266557 bp Feature: gene Location: 1266705-1267778 bp Feature: domain Description: FGE-sulfatase Location: 1266951-1267293 bp Feature: domain Description: FGE-sulfatase Location: 1266951-1267293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), LPD26 (pfam18842), SpoVG (pfam04026), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: NAMK01000006.1 Firmicutes bacterium isolate LMAG:71 MEG_71_6, whole genome shotgun sequence (473466 bp)
Overview 1 RT 1: 462468-466278 bp Neighborhood of RT #1 [462468, 466529] PRK03103 GIIM RVT-GII RVT_N HTH_XRE Feature: gene Location: 462468-463538 bp Feature: domain Description: PRK03103 Location: 462480-463446 bp Feature: domain Description: PRK03103 Location: 462480-463446 bp Feature: gene Location: 463792-464220 bp Feature: domain Description: GIIM Note: maturase Location: 463798-464017 bp Feature: domain Description: GIIM Note: maturase Location: 463798-464017 bp Feature: gene Location: 464282-464872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464285-464867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464285 -464867 bp Feature: gene Location: 464877-465263 bp Feature: RT Description: RVT_N Location: 464922-465159 bp Feature: RT Description: RVT_N Location: 464922-465 15 9 bp Feature: gene Location: 466173-466529 bp Feature: domain Description: HTH_XRE Location: 466182-466278 bp Feature: domain Description: HTH_XRE Location: 466182-466278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), GIIM (pfam08388), RVT-GII, RVT_N (pfam13655), HTH_XRE (smart00530)