myRT

myRT report for GCA_008679915.1_ASM867991v1

Download annotations/find similar RTs

Seq: NAME01000022.1 Ruminococcus faecis isolate LMAG:65 MEG_65_22, whole genome shotgun sequence (35444 bp)
Overview 1 RT 1: 10930-20078 bp Neighborhood of RT #1 [10930, 20707] IscR HDGYP RVT-GII HTH_30 SpaA CollagenBindB SpaA Feature: gene Location: 10930-12417 bp Feature: domain Description: IscR Location: 10960-11362 bp Feature: domain Description: IscR Location: 1 0960-1 1 362 bp Feature: domain Description: HDGYP Location: 11662-12406 bp Feature: domain Description: HDGYP Location: 1 1 662-1 2406 bp Feature: gene Location: 12521-12841 bp Feature: gene Location: 13193-13882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13403-13628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3403-1 3628 bp Feature: domain Description: HTH_30 Location: 13685-13841 bp Feature: domain Description: HTH_30 Location: 1 3685-1 3841 bp Feature: gene Location: 14087-14497 bp Feature: gene Location: 14540-20707 bp Feature: domain Description: SpaA Location: 19037-19232 bp Feature: domain Description: SpaA Location: 1 9037-1 9232 bp Feature: domain Description: CollagenBindB Location: 19406-19634 bp Feature: domain Description: CollagenBindB Location: 1 9406-1 9634 bp Feature: domain Description: SpaA Location: 19823-20078 bp Feature: domain Description: SpaA Location: 1 9823-20078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, HTH_30 (pfam13556), SpaA (pfam17802), CollagenBindB (cl15753)

Seq: NAME01000038.1 Ruminococcus faecis isolate LMAG:65 MEG_65_38, whole genome shotgun sequence (126768 bp)
Overview 1 RT 1: 100822-103007 bp Neighborhood of RT #1 [100822, 103007] HTH_ARSR RVT-GII Feature: gene Location: 100822-101118 bp Feature: domain Description: HTH_ARSR Location: 100852-101056 bp Feature: domain Description: HTH_ARSR Location: 100852 -101056 bp Feature: gene Location: 101174-101368 bp Feature: gene Location: 101450-102427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101453-102077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101453-102 077 bp Feature: gene Location: 102547-102744 bp Feature: gene Location: 102858-103007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), RVT-GII