myRT

myRT report for GCA_008680015.1_ASM868001v1

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Seq: NALZ01000001.1 Prevotella copri isolate LMAG:60 MEG_60_1, whole genome shotgun sequence (27482 bp)
Overview 1 RT 1: 6797-10728 bp Neighborhood of RT #1 [6797, 10728] rve COG4584 RVT-DGRs Feature: gene Location: 6797-8353 bp Feature: domain Description: rve Location: 7226-7595 bp Feature: domain Description: rve Location: 7226-7595 bp Feature: domain Description: COG4584 Location: 7763-7892 bp Feature: domain Description: COG4584 Location: 7763-7892 bp Feature: gene Location: 8543-9019 bp Feature: gene Location: 8898-9776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9105-9759 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 91 05-9759 bp Feature: gene Location: 9925-10182 bp Feature: gene Location: 10288-10728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), COG4584 (Transposase ), RVT-DGRs

Seq: NALZ01000011.1 Prevotella copri isolate LMAG:60 MEG_60_11, whole genome shotgun sequence (1621203 bp)
Overview 1 RT 1: 130514-134015 bp Neighborhood of RT #1 [130514, 134015] HTH_18 RVT-GII GIIM Feature: gene Location: 130514-130693 bp Feature: gene Location: 130666-130956 bp Feature: domain Description: HTH_18 Location: 130708-130945 bp Feature: domain Description: HTH_18 Location: 130708-130945 bp Feature: gene Location: 131645-132907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131849-132506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131849-132 506 bp Feature: domain Description: GIIM Note: maturase Location: 132587-132815 bp Feature: domain Description: GIIM Note: maturase Location: 132 587-132 815 bp Feature: gene Location: 133036-133293 bp Feature: gene Location: 133347-134015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), RVT-GII, GIIM (pfam08388)

Seq: NALZ01000004.1 Prevotella copri isolate LMAG:60 MEG_60_4, whole genome shotgun sequence (107926 bp)
Overview 1 RT 1: 105443-107924 bp Neighborhood of RT #1 [105443, 107924] RVT-DGRs Feature: gene Location: 105443-105886 bp Feature: gene Location: 105959-106441 bp Feature: gene Location: 106441-107742 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 106648-107329 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 106648-1073 29 bp Feature: gene Location: 107745-107924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: NALZ01000005.1 Prevotella copri isolate LMAG:60 MEG_60_5, whole genome shotgun sequence (495372 bp)
Overview 1 RT 1: 428266-434734 bp Neighborhood of RT #1 [428266, 434805] DUF4254 GT9_LPS_heptosyltransferase RVT-GII PRK09375 WcaA Feature: gene Location: 428266-428868 bp Feature: domain Description: DUF4254 Location: 428383-428809 bp Feature: domain Description: DUF4 254 Location: 4 28383-4 28809 bp Feature: gene Location: 428964-430049 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 428979-430029 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 4 28979-4 30029 bp Feature: gene Location: 430548-431660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 430890-431508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 30890-4 31508 bp Feature: gene Location: 432403-433512 bp Feature: domain Description: PRK09375 Location: 432571-433507 bp Feature: domain Description: PRK09375 Location: 4 32571-4 33507 bp Feature: gene Location: 433834-434805 bp Feature: domain Description: WcaA Location: 433867-434734 bp Feature: domain Description: WcaA Location: 4 33867-4 34 734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4254 (pfam14063), GT9_LPS_heptosyltransferase (cd03789), RVT-GII, PRK09375 (quinolinate synthase NadA), WcaA (TIGR04017)

Seq: NALZ01000007.1 Prevotella copri isolate LMAG:60 MEG_60_7, whole genome shotgun sequence (492714 bp)
Overview 1 RT 1: 52700-62584 bp 2 RT 2: 417028-422647 bp Neighborhood of RT #1 [52700, 62584] AAA-ATPase_like PDDEXK_9 RVT-GII GIIM Neighborhood of RT #2 [417028, 422647] thrS UMPK_like NptA RVT-GII GIIM Feature: gene Location: 52700-54433 bp Feature: domain Description: AAA-ATPase_like Location: 52733-53621 bp Feature: domain Description: AAA-ATPase_like Location: 5 2733-5 3621 bp Feature: domain Description: PDDEXK_9 Location: 54080-54404 bp Feature: domain Description: PDDEXK_9 Location: 5 4080-5 4404 bp Feature: gene Location: 54571-57114 bp Feature: gene Location: 57489-58838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57831-58449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 7831-5 8449 bp Feature: domain Description: GIIM Note: maturase Location: 58506-58707 bp Feature: domain Description: GIIM Note: maturase Location: 5 85 06-5 8707 bp Feature: gene Location: 59345-60757 bp Feature: gene Location: 60806-62584 bp Feature: gene Location: 417028-418689 bp Feature: domain Description: thrS Location: 417043-417634 bp Feature: domain Description: thrS Location: 417043-417634 bp Feature: domain Description: UMPK_like Location: 417898-418489 bp Feature: domain Description: UMPK_like Location: 417898-418489 bp Feature: gene Location: 418861-420570 bp Feature: domain Description: NptA Location: 418876-420547 bp Feature: domain Description: NptA Location: 418876-4205 47 bp Feature: gene Location: 420697-422103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421042-421657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421042-42165 7 bp Feature: domain Description: GIIM Note: maturase Location: 421714-421924 bp Feature: domain Description: GIIM Note: maturase Location: 421714-421924 bp Feature: gene Location: 422149-422319 bp Feature: gene Location: 422510-422647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-GII, GIIM (pfam08388), thrS (TIGR00418), UMPK_like (cd02028), NptA (COG1283)