myRT

myRT report for GCA_008680055.1_ASM868005v1

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Seq: NAMA01000012.1 Eubacterium sp. LMAG:61 MEG_61_12, whole genome shotgun sequence (190507 bp)
Overview 1 RT 1: 140120-146056 bp Neighborhood of RT #1 [140120, 146130] RVT-GII GIIM aspS hisS Feature: gene Location: 140120-140302 bp Feature: gene Location: 140312-140893 bp Feature: gene Location: 141035-142435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141263-141887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 263-1 41 887 bp Feature: domain Description: GIIM Note: maturase Location: 141956-142064 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 956-1 42064 bp Feature: gene Location: 143087-144823 bp Feature: domain Description: aspS Location: 143090-144818 bp Feature: domain Description: aspS Location: 1 43090-1 4481 8 bp Feature: gene Location: 144826-146130 bp Feature: domain Description: hisS Location: 144838-146056 bp Feature: domain Description: hisS Location: 1 44838-1 46056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), aspS (PRK00476), hisS (TIGR00442)

Seq: NAMA01000013.1 Eubacterium sp. LMAG:61 MEG_61_13, whole genome shotgun sequence (38143 bp)
Overview 1 RT 1: 21418-26513 bp Neighborhood of RT #1 [21418, 26674] COG5421 DDE_Tnp_1 RVT-GII GIIM spoT_relA RecO Feature: gene Location: 21418-22410 bp Feature: domain Description: COG5421 Location: 21994-22279 bp Feature: domain Description: COG542 1 Location: 2 1994-2 2 2 79 bp Feature: gene Location: 22575-23162 bp Feature: domain Description: DDE_Tnp_1 Location: 22683-22923 bp Feature: domain Description: DDE_Tnp_1 Location: 2 2 683-2 2 92 3 bp Feature: gene Location: 23423-24823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23651-24275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3651-2 42 75 bp Feature: domain Description: GIIM Note: maturase Location: 24344-24452 bp Feature: domain Description: GIIM Note: maturase Location: 2 4344-2 4452 bp Feature: gene Location: 25536-25952 bp Feature: domain Description: spoT_relA Location: 25554-25896 bp Feature: domain Description: spoT_relA Location: 2 5554-2 5896 bp Feature: gene Location: 25952-26674 bp Feature: domain Description: RecO Location: 25964-26513 bp Feature: domain Description: RecO Location: 2 5964-2 6513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5421 (Transposase ), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), spoT_relA (TIGR00691), RecO (COG1381)

Seq: NAMA01000004.1 Eubacterium sp. LMAG:61 MEG_61_4, whole genome shotgun sequence (814881 bp)
Overview 1 RT 1: 287890-294447 bp 2 RT 2: 524424-528491 bp 3 RT 3: 601915-606503 bp 4 RT 4: 638622-641935 bp Neighborhood of RT #1 [287890, 294455] M3B_PepF RVT-GII GIIM GlnQ PBP2_GltS HisM Neighborhood of RT #2 [524424, 528556] YozG COG3177 RVT-GII GIIM RelB_DinJ Neighborhood of RT #3 [601915, 606547] TPP_TK 4HBD_NAD RVT-GII GIIM GntR Neighborhood of RT #4 [638622, 641943] VanZ KOG4059 RVT-GII GIIM thioredoxin Feature: gene Location: 287890-288132 bp Feature: gene Location: 288221-289981 bp Feature: domain Description: M3B_PepF Location: 288236-289964 bp Feature: domain Description: M3 B_PepF Location: 28823 6-289964 bp Feature: gene Location: 290138-291538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290366-290990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2903 66-290990 bp Feature: domain Description: GIIM Note: maturase Location: 291059-291167 bp Feature: domain Description: GIIM Note: maturase Location: 291059-291167 bp Feature: gene Location: 292190-292930 bp Feature: domain Description: GlnQ Location: 292211-292925 bp Feature: domain Description: GlnQ Location: 292211-292925 bp Feature: gene Location: 292917-294455 bp Feature: domain Description: PBP2_GltS Location: 293058-293745 bp Feature: domain Description: PBP2_GltS Location: 293 058-293 745 bp Feature: domain Description: HisM Location: 293784-294447 bp Feature: domain Description: HisM Location: 293 784-294447 bp Feature: gene Location: 524424-524645 bp Feature: domain Description: YozG Location: 524436-524640 bp Feature: domain Description: YozG Location: 52443 6-524640 bp Feature: gene Location: 524792-525871 bp Feature: domain Description: COG3177 Location: 524936-525851 bp Feature: domain Description: COG3 177 Location: 52493 6-525851 bp Feature: gene Location: 525986-527278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526235-526898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52623 5-526898 bp Feature: domain Description: GIIM Note: maturase Location: 526967-527171 bp Feature: domain Description: GIIM Note: maturase Location: 526967-527171 bp Feature: gene Location: 527316-527549 bp Feature: gene Location: 528260-528556 bp Feature: domain Description: RelB_DinJ Location: 528296-528491 bp Feature: domain Description: RelB_DinJ Location: 528296-528491 bp Feature: gene Location: 601915-602742 bp Feature: domain Description: TPP_TK Location: 601951-602707 bp Feature: domain Description: TPP_TK Location: 601951-602707 bp Feature: gene Location: 602751-603866 bp Feature: domain Description: 4HBD_NAD Location: 602763-603858 bp Feature: domain Description: 4HBD_NAD Location: 602763 -603 858 bp Feature: gene Location: 603987-605279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604236-604899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60423 6-604899 bp Feature: domain Description: GIIM Note: maturase Location: 604968-605172 bp Feature: domain Description: GIIM Note: maturase Location: 604968-605172 bp Feature: gene Location: 605317-605550 bp Feature: gene Location: 605894-606547 bp Feature: domain Description: GntR Location: 605903-606503 bp Feature: domain Description: GntR Location: 605903 -606503 bp Feature: gene Location: 638622-639206 bp Feature: domain Description: VanZ Location: 638826-639150 bp Feature: domain Description: VanZ Location: 63 8826-63 9150 bp Feature: gene Location: 639260-639670 bp Feature: domain Description: KOG4059 Location: 639266-639629 bp Feature: domain Description: KOG4059 Location: 63 9266-63 9629 bp Feature: gene Location: 639768-641060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640017-640680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640017-640680 bp Feature: domain Description: GIIM Note: maturase Location: 640749-640953 bp Feature: domain Description: GIIM Note: maturase Location: 640749-640953 bp Feature: gene Location: 641098-641331 bp Feature: gene Location: 641608-641943 bp Feature: domain Description: thioredoxin Location: 641653-641935 bp Feature: domain Description: thioredoxin Location: 641653 -64193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M3B_PepF (cd09610), RVT-GII, GIIM (pfam08388), GlnQ (COG1126), PBP2_GltS (cd13620), HisM (COG0765), YozG (COG3655), COG3177 (Fic family protein ), RelB_DinJ (TIGR02384), TPP_TK (cd02012)
4HBD_NAD (cd14860), GntR (pfam00392), VanZ (pfam04892), KOG4059 (KOG4059, Uncharacterized conserved protein ), thioredoxin (TIGR01068)

Seq: NAMA01000008.1 Eubacterium sp. LMAG:61 MEG_61_8, whole genome shotgun sequence (200040 bp)
Overview 1 RT 1: 79224-87526 bp Neighborhood of RT #1 [79224, 87561] HAD_HPP MdlB RVT-GII GIIM PtsA MdlB Feature: gene Location: 79224-79994 bp Feature: domain Description: HAD_HPP Location: 79233-79986 bp Feature: domain Description: HAD_HPP Location: 79233-79986 bp Feature: gene Location: 80083-81819 bp Feature: domain Description: MdlB Location: 80089-81808 bp Feature: domain Description: MdlB Location: 80089-81808 bp Feature: gene Location: 82470-83870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82698-83322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82698-83322 bp Feature: domain Description: GIIM Note: maturase Location: 83391-83499 bp Feature: domain Description: GIIM Note: maturase Location: 83391-834 99 bp Feature: gene Location: 84070-85773 bp Feature: domain Description: PtsA Location: 84073-85759 bp Feature: domain Description: PtsA Location: 84 073-85759 bp Feature: gene Location: 85822-87561 bp Feature: domain Description: MdlB Location: 85828-87526 bp Feature: domain Description: MdlB Location: 85828-87526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD_HPP (cd07517), MdlB (COG1132), RVT-GII, GIIM (pfam08388), PtsA (COG1080)

Seq: NAMA01000009.1 Eubacterium sp. LMAG:61 MEG_61_9, whole genome shotgun sequence (375180 bp)
Overview 1 RT 1: 11761-15481 bp 2 RT 2: 22672-28220 bp 3 RT 3: 201392-207214 bp 4 RT 4: 347321-351205 bp Neighborhood of RT #1 [11761, 15481] GepA RVT-GII GIIM Neighborhood of RT #2 [22672, 28240] IstB_IS21 RVT-GII GIIM COG3464 COG3464 FIVAR Neighborhood of RT #3 [201392, 207321] MATE_MepA_like YcjU RVT-GII GIIM YcjU AgaS Neighborhood of RT #4 [347321, 351205] HATPase_BceS-YxdK-YvcQ-like OmpR RVT-GII GIIM Feature: gene Location: 11761-12732 bp Feature: gene Location: 12744-13232 bp Feature: domain Description: GepA Location: 12750-13200 bp Feature: domain Description: GepA Location: 1275 0-13200 bp Feature: gene Location: 13330-14622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13579-14242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135 79-14242 bp Feature: domain Description: GIIM Note: maturase Location: 14311-14515 bp Feature: domain Description: GIIM Note: maturase Location: 14311-145 15 bp Feature: gene Location: 14660-14893 bp Feature: gene Location: 15344-15481 bp Feature: gene Location: 22672-23442 bp Feature: domain Description: IstB_IS21 Location: 22864-23398 bp Feature: domain Description: IstB_IS21 Location: 22864-23398 bp Feature: gene Location: 23564-23737 bp Feature: gene Location: 23887-25167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24103-24718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24103-24718 bp Feature: domain Description: GIIM Note: maturase Location: 24781-24994 bp Feature: domain Description: GIIM Note: maturase Location: 24781-24994 bp Feature: gene Location: 25968-27434 bp Feature: domain Description: COG3464 Location: 26013-26889 bp Feature: domain Description: COG3464 Location: 26013-26889 bp Feature: domain Description: COG3464 Location: 27228-27336 bp Feature: domain Description: COG3464 Location: 27228-27336 bp Feature: gene Location: 27824-28240 bp Feature: domain Description: FIVAR Location: 28052-28220 bp Feature: domain Description: FIVAR Location: 2805 2-28220 bp Feature: gene Location: 201392-202741 bp Feature: domain Description: MATE_MepA_like Location: 201425-202697 bp Feature: domain Description: MATE_MepA_like Location: 201425 -202697 bp Feature: gene Location: 202728-203396 bp Feature: domain Description: YcjU Location: 202731-203343 bp Feature: domain Description: YcjU Location: 202731-203343 bp Feature: gene Location: 203558-204958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203786-204410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203786-204410 bp Feature: domain Description: GIIM Note: maturase Location: 204479-204587 bp Feature: domain Description: GIIM Note: maturase Location: 204479-2045 87 bp Feature: gene Location: 205599-206258 bp Feature: domain Description: YcjU Location: 205611-206250 bp Feature: domain Description: YcjU Location: 205 611-20625 0 bp Feature: gene Location: 206242-207321 bp Feature: domain Description: AgaS Location: 206257-207214 bp Feature: domain Description: AgaS Location: 20625 7-207214 bp Feature: gene Location: 347321-348310 bp Feature: domain Description: HATPase_BceS-YxdK-YvcQ-like Location: 347972-348281 bp Feature: domain Description: HATPase_BceS-YxdK-YvcQ-like Location: 347972-348281 bp Feature: gene Location: 348307-348975 bp Feature: domain Description: OmpR Location: 348316-348970 bp Feature: domain Description: OmpR Location: 348316-348970 bp Feature: gene Location: 349073-350365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349322-349985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349322-349985 bp Feature: domain Description: GIIM Note: maturase Location: 350054-350258 bp Feature: domain Description: GIIM Note: maturase Location: 35 005 4-35 025 8 bp Feature: gene Location: 350403-350636 bp Feature: gene Location: 351077-351205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GepA (COG3600), RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695), COG3464 (Transposase ), FIVAR (pfam07554), MATE_MepA_like (cd13143), YcjU (COG0637), AgaS (COG2222), HATPase_BceS-YxdK-YvcQ-like (cd16948)
OmpR (COG0745)