myRT

myRT report for GCA_008680195.1_ASM868019v1

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Seq: NALR01000016.1 Bacteroides vulgatus isolate LMAG:52 MEG_52_16, whole genome shotgun sequence (31470 bp)
Overview 1 RT 1: 15322-20464 bp Neighborhood of RT #1 [15322, 20652] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 INTN1_C_like DDE_Tnp_1 Feature: gene Location: 15322-16485 bp Feature: domain Description: Arm-DNA-bind_5 Location: 15490-15718 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 5490-1 571 8 bp Feature: domain Description: Phage_int_SAM_5 Location: 15787-16087 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 5787-1 6087 bp Feature: domain Description: INTN1_C_like Location: 16135-16462 bp Feature: domain Description: INTN1 _C_like Location: 1 61 35-1 6462 bp Feature: gene Location: 16715-16903 bp Feature: gene Location: 17027-18844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17291-18113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7291 -1 81 1 3 bp Feature: domain Description: Intron_maturas2 Location: 18188-18494 bp Feature: domain Description: Intron_maturas2 Location: 1 81 88-1 8494 bp Feature: gene Location: 18852-19184 bp Feature: domain Description: INTN1_C_like Location: 18960-19137 bp Feature: domain Description: INTN1 _C_like Location: 1 8960-1 91 37 bp Feature: gene Location: 19363-20652 bp Feature: domain Description: DDE_Tnp_1 Location: 19792-20464 bp Feature: domain Description: DDE_Tnp_1 Location: 1 9792-20464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_1 (pfam01609)

Seq: NALR01000018.1 Bacteroides vulgatus isolate LMAG:52 MEG_52_18, whole genome shotgun sequence (296273 bp)
Overview 1 RT 1: 3417-8071 bp Neighborhood of RT #1 [3417, 8142] RVT-DGRs Dam Feature: gene Location: 3417-4850 bp Feature: gene Location: 5039-5347 bp Feature: gene Location: 5364-6689 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5553-6213 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5553-62 13 bp Feature: gene Location: 6703-7113 bp Feature: gene Location: 7300-8142 bp Feature: domain Description: Dam Location: 7303-8071 bp Feature: domain Description: Dam Location: 7303-8071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: NALR01000002.1 Bacteroides vulgatus isolate LMAG:52 MEG_52_2, whole genome shotgun sequence (109538 bp)
Overview 1 RT 1: 49308-54497 bp Neighborhood of RT #1 [49308, 54511] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 49308-49622 bp Feature: domain Description: DUF3876 Location: 49362-49611 bp Feature: domain Description: DUF3 876 Location: 493 62-49611 bp Feature: gene Location: 49637-51331 bp Feature: domain Description: Bac_Flav_CT_G Location: 49757-51323 bp Feature: domain Description: Bac_Flav_CT_G Location: 49757-513 23 bp Feature: gene Location: 51328-52989 bp Feature: domain Description: RVT_N Location: 51382-51625 bp Feature: domain Description: RVT_N Location: 513 82-51625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51670-52318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51670-523 18 bp Feature: domain Description: GIIM Note: maturase Location: 52372-52603 bp Feature: domain Description: GIIM Note: maturase Location: 523 72-52603 bp Feature: gene Location: 53071-53451 bp Feature: gene Location: 53573-54511 bp Feature: domain Description: Bac_Flav_CT_G Location: 53576-54497 bp Feature: domain Description: Bac_Flav_CT_G Location: 53 576-54497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: NALR01000026.1 Bacteroides vulgatus isolate LMAG:52 MEG_52_26, whole genome shotgun sequence (56076 bp)
Overview 1 RT 1: 5765-11090 bp Neighborhood of RT #1 [5765, 11113] ComA-like_MBL-fold ComA-like_MBL-fold INTN1_C_like RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 5765-6799 bp Feature: domain Description: ComA-like_MBL-fold Location: 5804-6101 bp Feature: domain Description: ComA-like_MBL-fold Location: 5804 -6101 bp Feature: domain Description: ComA-like_MBL-fold Location: 6344-6560 bp Feature: domain Description: ComA-like_MBL-fold Location: 634 4 -6560 bp Feature: gene Location: 7254-7586 bp Feature: domain Description: INTN1_C_like Location: 7362-7539 bp Feature: domain Description: INTN1_C_like Location: 7362-7539 bp Feature: gene Location: 7594-9411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7858-8680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7858-8680 bp Feature: domain Description: Intron_maturas2 Location: 8755-9061 bp Feature: domain Description: Intron_maturas2 Location: 8755-9061 bp Feature: gene Location: 9417-9557 bp Feature: gene Location: 9953-11113 bp Feature: domain Description: Arm-DNA-bind_5 Location: 10118-10346 bp Feature: domain Description: Arm-DNA-bind_5 Location: 10118-1034 6 bp Feature: domain Description: Phage_int_SAM_5 Location: 10469-10715 bp Feature: domain Description: Phage_int_SAM_5 Location: 104 69-10715 bp Feature: domain Description: INTN1_C_like Location: 10763-11090 bp Feature: domain Description: INTN1_C_like Location: 10763-11090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102)

Seq: NALR01000035.1 Bacteroides vulgatus isolate LMAG:52 MEG_52_35, whole genome shotgun sequence (120205 bp)
Overview 1 RT 1: 91005-97919 bp Neighborhood of RT #1 [91005, 97954] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C RimL Feature: gene Location: 91005-92276 bp Feature: domain Description: Relaxase Location: 91182-91503 bp Feature: domain Description: Relaxase Location: 91182-915 03 bp Feature: domain Description: Relaxase Location: 91827-92061 bp Feature: domain Description: Relaxase Location: 91827-92061 bp Feature: gene Location: 92313-93239 bp Feature: domain Description: YWFCY Location: 92322-92499 bp Feature: domain Description: YWFCY Location: 92322-92499 bp Feature: gene Location: 93876-95423 bp Feature: domain Description: RVT_N Location: 93930-94173 bp Feature: domain Description: RVT_N Location: 93930-94173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94218-94866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94218-94866 bp Feature: domain Description: GIIM Note: maturase Location: 94920-95151 bp Feature: domain Description: GIIM Note: maturase Location: 94920-95 15 1 bp Feature: gene Location: 95448-96737 bp Feature: domain Description: TraG-D_C Location: 96114-96447 bp Feature: domain Description: TraG-D_C Location: 96114-96447 bp Feature: gene Location: 96779-97954 bp Feature: domain Description: RimL Location: 97427-97919 bp Feature: domain Description: RimL Location: 97427-97919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), RimL (COG1670)

Seq: NALR01000004.1 Bacteroides vulgatus isolate LMAG:52 MEG_52_4, whole genome shotgun sequence (157286 bp)
Overview 1 RT 1: 88152-97589 bp Neighborhood of RT #1 [88152, 97589] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 88152-94865 bp Feature: domain Description: Laminin_G_3 Location: 89595-89673 bp Feature: domain Description: Laminin_G_3 Location: 89595-896 73 bp Feature: domain Description: Laminin_G_3 Location: 90324-90750 bp Feature: domain Description: Laminin_G_3 Location: 90324-90750 bp Feature: gene Location: 95109-95279 bp Feature: gene Location: 95381-96685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95591-96269 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95591-96 26 9 bp Feature: gene Location: 96682-97167 bp Feature: gene Location: 97347-97589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: NALR01000008.1 Bacteroides vulgatus isolate LMAG:52 MEG_52_8, whole genome shotgun sequence (216145 bp)
Overview 1 RT 1: 124421-130766 bp 2 RT 2: 158726-163391 bp 3 RT 3: 169394-175026 bp Neighborhood of RT #1 [124421, 130766] Porphyrn_cat_1 BPA_C CBM_4_9 LRR_4 RVT-GII GIIM Neighborhood of RT #2 [158726, 163897] TraG-D_C RVT_N RVT-GII GIIM YWFCY Neighborhood of RT #3 [169394, 175026] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 124421-126607 bp Feature: domain Description: Porphyrn_cat_1 Location: 125585-125891 bp Feature: domain Description: Porphyrn_cat_1 Location: 125585-125891 bp Feature: domain Description: BPA_C Location: 125924-126197 bp Feature: domain Description: BPA_C Location: 125924-126197 bp Feature: domain Description: CBM_4_9 Location: 126218-126521 bp Feature: domain Description: CBM_4_9 Location: 126218-126521 bp Feature: gene Location: 126613-127923 bp Feature: domain Description: LRR_4 Location: 126814-126904 bp Feature: domain Description: LRR_4 Location: 126814-126904 bp Feature: gene Location: 128411-129811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128747-129362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1287 47 -129362 bp Feature: domain Description: GIIM Note: maturase Location: 129416-129647 bp Feature: domain Description: GIIM Note: maturase Location: 129416-129647 bp Feature: gene Location: 130231-130425 bp Feature: gene Location: 130545-130766 bp Feature: gene Location: 158726-159262 bp Feature: gene Location: 159434-160912 bp Feature: domain Description: TraG-D_C Location: 160259-160592 bp Feature: domain Description: TraG-D_C Location: 160259-160592 bp Feature: gene Location: 160912-162591 bp Feature: domain Description: RVT_N Location: 160981-161224 bp Feature: domain Description: RVT_N Location: 160981-161224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161269-161917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161269-161917 bp Feature: domain Description: GIIM Note: maturase Location: 161968-162202 bp Feature: domain Description: GIIM Note: maturase Location: 161968-162202 bp Feature: gene Location: 162676-162828 bp Feature: gene Location: 163208-163897 bp Feature: domain Description: YWFCY Location: 163214-163391 bp Feature: domain Description: YWFCY Location: 163214-163391 bp Feature: gene Location: 169394-171490 bp Feature: domain Description: Bac_Flav_CT_G Location: 169397-171476 bp Feature: domain Description: Bac_Flav_CT_G Location: 169397 -17 147 6 bp Feature: gene Location: 171525-171692 bp Feature: gene Location: 172038-173852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172302-173124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 2302-17 3124 bp Feature: domain Description: Intron_maturas2 Location: 173199-173517 bp Feature: domain Description: Intron_maturas2 Location: 17 3199-17 3517 bp Feature: domain Description: HNHc Note: nucleases Location: 173673-173823 bp Feature: domain Description: HNHc Note: nucleases Location: 17 367 3-17 3823 bp Feature: gene Location: 173930-174406 bp Feature: domain Description: Bac_Flav_CT_G Location: 173957-174371 bp Feature: domain Description: Bac_Flav_CT_G Location: 17 3957 -17 437 1 bp Feature: gene Location: 174403-175026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porphyrn_cat_1 (pfam18206), BPA_C (pfam18040), CBM_4_9 (pfam02018), LRR_4 (pfam12799), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), RVT_N (pfam13655), YWFCY (pfam14293), Bac_Flav_CT_G (TIGR03783)
Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NALR01000009.1 Bacteroides vulgatus isolate LMAG:52 MEG_52_9, whole genome shotgun sequence (672730 bp)
Overview 1 RT 1: 468810-473841 bp Neighborhood of RT #1 [468810, 473841] DUF1016_N DUF1016_N YhcG_C INTN1_C_like RVT-GII Intron_maturas2 HNHc RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 468810-469757 bp Feature: domain Description: DUF1016_N Location: 468873-469101 bp Feature: domain Description: DUF1016_N Location: 468 8 73-469101 bp Feature: domain Description: DUF1016_N Location: 469350-469509 bp Feature: domain Description: DUF1016_N Location: 469350-469509 bp Feature: domain Description: YhcG_C Location: 469584-469692 bp Feature: domain Description: YhcG_C Location: 46958 4-469692 bp Feature: gene Location: 469823-470206 bp Feature: domain Description: INTN1_C_like Location: 469931-470168 bp Feature: domain Description: INTN1_C_like Location: 469931-470168 bp Feature: gene Location: 470214-471125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470220-470439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 470220-470439 bp Feature: domain Description: Intron_maturas2 Location: 470469-470775 bp Feature: domain Description: Intron_maturas2 Location: 470469-470775 bp Feature: domain Description: HNHc Note: nucleases Location: 470952-471096 bp Feature: domain Description: HNHc Note: nucleases Location: 470952-471096 bp Feature: gene Location: 471122-472030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471386-471875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47138 6-4718 75 bp Feature: gene Location: 472572-473642 bp Feature: domain Description: Arm-DNA-bind_5 Location: 472683-472911 bp Feature: domain Description: Arm-DNA-bind_5 Location: 47268 3-472911 bp Feature: domain Description: Phage_int_SAM_5 Location: 472986-473265 bp Feature: domain Description: Phage_int_SAM_5 Location: 47298 6-473265 bp Feature: domain Description: INTN1_C_like Location: 473325-473619 bp Feature: domain Description: INTN1_C_like Location: 473325-473619 bp Feature: gene Location: 473686-473841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YhcG_C, INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102)