myRT

myRT report for GCA_008680325.1_ASM868032v1

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Seq: NALL01000010.1 Firmicutes bacterium isolate LMAG:46 MEG_46_10, whole genome shotgun sequence (743708 bp)
Overview 1 RT 1: 736133-740833 bp Neighborhood of RT #1 [736133, 741000] ParM_like RVT-GII OmpR PRK10549 Feature: gene Location: 736133-736516 bp Feature: gene Location: 736520-737617 bp Feature: domain Description: ParM_like Location: 736727-737582 bp Feature: domain Description: ParM_like Location: 736727-737582 bp Feature: gene Location: 738018-739415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738399-739062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738399-739062 bp Feature: gene Location: 739562-740236 bp Feature: domain Description: OmpR Location: 739574-740231 bp Feature: domain Description: OmpR Location: 739574-740231 bp Feature: gene Location: 740224-741000 bp Feature: domain Description: PRK10549 Location: 740518-740833 bp Feature: domain Description: PRK1 0549 Location: 74051 8-740833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParM_like (cd10227), RVT-GII, OmpR (COG0745), PRK10549 (two-component system sensor histidine kinase BaeS)

Seq: NALL01000014.1 Firmicutes bacterium isolate LMAG:46 MEG_46_14, whole genome shotgun sequence (994557 bp)
Overview 1 RT 1: 74-4242 bp 2 RT 2: 118408-135274 bp 3 RT 3: 519635-523920 bp 4 RT 4: 714245-720877 bp 5 RT 5: 857256-861351 bp Neighborhood of RT #1 [74, 4242] VanZ RVT-GII DUF4316 Neighborhood of RT #2 [118408, 135285] Recombinase RVT-GII KilA-N PaaI_thioesterase RVT-GII GIIM KOG0399 GOGAT_sm_gam Neighborhood of RT #3 [519635, 523940] DUF4268 YozG RVT-GII GIIM GGGtGRT Neighborhood of RT #4 [714245, 720921] RVT-GII Intron_maturas2 VirD4 DUF3801 Neighborhood of RT #5 [857256, 861386] BID_2 SLAP_DUP TcdA RVT-GII GIIM Fur Feature: gene Location: 74-1099 bp Feature: domain Description: VanZ Location: 137-548 bp Feature: domain Description: VanZ Location: 137-548 bp Feature: gene Location: 1330-1575 bp Feature: gene Location: 1665-2960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1920-2610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 0-2 610 bp Feature: gene Location: 3212-3517 bp Feature: domain Description: DUF4316 Location: 3380-3485 bp Feature: domain Description: DUF4316 Location: 3380-3485 bp Feature: gene Location: 3928-4242 bp Feature: gene Location: 118408-119643 bp Feature: domain Description: Recombinase Location: 118417-118693 bp Feature: domain Description: Recombinase Location: 118417-118693 bp Feature: gene Location: 119636-119773 bp Feature: gene Location: 120081-121487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120471-121134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0471-12 1134 bp Feature: gene Location: 121698-122708 bp Feature: gene Location: 123654-124481 bp Feature: domain Description: KilA-N Location: 123696-124086 bp Feature: domain Description: KilA-N Location: 12 3696-12 4086 bp Feature: gene Location: 126389-126883 bp Feature: domain Description: PaaI_thioesterase Location: 126524-126851 bp Feature: domain Description: PaaI_thioesterase Location: 12 652 4-12 6851 bp Feature: gene Location: 126943-127080 bp Feature: gene Location: 127436-128740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127637-128255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 7637-12 82 55 bp Feature: domain Description: GIIM Note: maturase Location: 128309-128525 bp Feature: domain Description: GIIM Note: maturase Location: 12 8309-12 852 5 bp Feature: gene Location: 129194-133777 bp Feature: domain Description: KOG0399 Location: 129212-133757 bp Feature: domain Description: KOG0399 Location: 12 92 12 -133757 bp Feature: gene Location: 133792-135285 bp Feature: domain Description: GOGAT_sm_gam Location: 133801-135274 bp Feature: domain Description: GOGAT_sm_gam Location: 133801-1352 74 bp Feature: gene Location: 519635-520561 bp Feature: domain Description: DUF4268 Location: 520157-520556 bp Feature: domain Description: DUF42 68 Location: 52 0157-52 0556 bp Feature: gene Location: 520578-520796 bp Feature: domain Description: YozG Location: 520590-520791 bp Feature: domain Description: YozG Location: 52 0590-52 0791 bp Feature: gene Location: 521054-522358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521255-521873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 12 55-52 1873 bp Feature: domain Description: GIIM Note: maturase Location: 521927-522143 bp Feature: domain Description: GIIM Note: maturase Location: 52 192 7-52 2 143 bp Feature: gene Location: 522715-522852 bp Feature: gene Location: 522927-523940 bp Feature: domain Description: GGGtGRT Location: 522942-523920 bp Feature: domain Description: GGGtGRT Location: 52 2 942 -52 392 0 bp Feature: gene Location: 714245-715024 bp Feature: gene Location: 715094-715672 bp Feature: gene Location: 716008-717840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 716287-717121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7162 87-71712 1 bp Feature: domain Description: Intron_maturas2 Location: 717199-717502 bp Feature: domain Description: Intron_maturas2 Location: 717199-717502 bp Feature: gene Location: 718381-719796 bp Feature: domain Description: VirD4 Location: 718594-719767 bp Feature: domain Description: VirD4 Location: 718594-719767 bp Feature: gene Location: 719803-720921 bp Feature: domain Description: DUF3801 Location: 719905-720877 bp Feature: domain Description: DUF3801 Location: 719905-72 0877 bp Feature: gene Location: 857256-858338 bp Feature: domain Description: BID_2 Location: 857766-857958 bp Feature: domain Description: BID_2 Location: 857766-857958 bp Feature: domain Description: SLAP_DUP Location: 858024-858303 bp Feature: domain Description: SLAP_DUP Location: 85802 4-858303 bp Feature: gene Location: 858360-859118 bp Feature: domain Description: TcdA Location: 858369-859113 bp Feature: domain Description: TcdA Location: 858369-859113 bp Feature: gene Location: 859284-860588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859485-860103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 859485-860103 bp Feature: domain Description: GIIM Note: maturase Location: 860157-860373 bp Feature: domain Description: GIIM Note: maturase Location: 860157-860373 bp Feature: gene Location: 860944-861081 bp Feature: gene Location: 861141-861386 bp Feature: domain Description: Fur Location: 861147-861351 bp Feature: domain Description: Fur Location: 861147-861351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4316 (pfam14195), VanZ (pfam04892), Recombinase (pfam07508), KilA-N (pfam04383), PaaI_thioesterase (cd03443), GIIM (pfam08388), KOG0399 (KOG0399, Glutamate synthase ), GOGAT_sm_gam (TIGR01317), DUF4268 (pfam14088)
YozG (COG3655), GGGtGRT (pfam14057), Intron_maturas2 (pfam01348), VirD4 (COG3505), DUF3801 (pfam12687), BID_2 (smart00635), SLAP_DUP (TIGR04398), TcdA (COG1179), Fur (COG0735)

Seq: NALL01000015.1 Firmicutes bacterium isolate LMAG:46 MEG_46_15, whole genome shotgun sequence (66350 bp)
Overview 1 RT 1: 37181-42927 bp Neighborhood of RT #1 [37181, 42927] AAA-ATPase_like PDDEXK_9 RVT-GII BID_2 BID_2 Feature: gene Location: 37181-37315 bp Feature: gene Location: 37388-39091 bp Feature: domain Description: AAA-ATPase_like Location: 37412-38300 bp Feature: domain Description: AAA-ATPase_like Location: 3 7412-3 83 00 bp Feature: domain Description: PDDEXK_9 Location: 38774-39080 bp Feature: domain Description: PDDEXK_9 Location: 3 8774-3 9080 bp Feature: gene Location: 39326-39937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39584-39926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9584-3 9926 bp Feature: gene Location: 40217-42727 bp Feature: domain Description: BID_2 Location: 40310-40532 bp Feature: domain Description: BID_2 Location: 403 10-4053 2 bp Feature: domain Description: BID_2 Location: 40598-40811 bp Feature: domain Description: BID_2 Location: 40598-40811 bp Feature: gene Location: 42790-42927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), RVT-GII, BID_2 (smart00635)

Seq: NALL01000017.1 Firmicutes bacterium isolate LMAG:46 MEG_46_17, whole genome shotgun sequence (58240 bp)
Overview 1 RT 1: 31317-34949 bp Neighborhood of RT #1 [31317, 35068] YfcA RVT-GII GIIM AzlD AzlC Feature: gene Location: 31317-32093 bp Feature: domain Description: YfcA Location: 31329-32088 bp Feature: domain Description: YfcA Location: 31329-32088 bp Feature: gene Location: 32098-32283 bp Feature: gene Location: 32639-33943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32840-33458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284 0-334 58 bp Feature: domain Description: GIIM Note: maturase Location: 33512-33728 bp Feature: domain Description: GIIM Note: maturase Location: 33512-33728 bp Feature: gene Location: 34020-34325 bp Feature: domain Description: AzlD Location: 34038-34308 bp Feature: domain Description: AzlD Location: 34 038-34 308 bp Feature: gene Location: 34322-35068 bp Feature: domain Description: AzlC Location: 34331-34949 bp Feature: domain Description: AzlC Location: 34 331-34 94 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfcA (COG0730), RVT-GII, GIIM (pfam08388), AzlD (pfam05437), AzlC (pfam03591)

Seq: NALL01000008.1 Firmicutes bacterium isolate LMAG:46 MEG_46_8, whole genome shotgun sequence (501952 bp)
Overview 1 RT 1: 1875-5211 bp 2 RT 2: 253239-255879 bp Neighborhood of RT #1 [1875, 5243] AAA_18 RVT-GII DUF3221 Neighborhood of RT #2 [253239, 255879] RVT-GII Feature: gene Location: 1875-2519 bp Feature: domain Description: AAA_18 Location: 1926-2229 bp Feature: domain Description: AAA_18 Location: 1926-2229 bp Feature: gene Location: 2817-3062 bp Feature: gene Location: 3152-4447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3407-4097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3407-4097 bp Feature: gene Location: 4576-4935 bp Feature: gene Location: 4845-5243 bp Feature: domain Description: DUF3221 Location: 5103-5211 bp Feature: domain Description: DUF3221 Location: 5 103-5 211 bp Feature: gene Location: 253239-253433 bp Feature: gene Location: 253471-253917 bp Feature: gene Location: 254162-255121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254270-254960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 4270-25 4960 bp Feature: gene Location: 255369-255692 bp Feature: gene Location: 255673-255879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_18 (pfam13238), RVT-GII, DUF3221 (pfam11518)