myRT

myRT report for GCA_008680425.1_ASM868042v1

Download annotations/find similar RTs

Seq: NALH01000001.1 Bacteroides dorei isolate LMAG:42 MEG_42_1, whole genome shotgun sequence (511413 bp)
Overview 1 RT 1: 460731-465590 bp Neighborhood of RT #1 [460731, 465628] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 HTH_17 Feature: gene Location: 460731-460886 bp Feature: gene Location: 461144-462313 bp Feature: domain Description: Arm-DNA-bind_5 Location: 461174-461429 bp Feature: domain Description: Arm-DNA-bind_5 Location: 461 1 74-461 429 bp Feature: domain Description: Phage_int_SAM_5 Location: 461468-461789 bp Feature: domain Description: Phage_int_SAM_5 Location: 461 468-461 789 bp Feature: domain Description: INTN1_C_like Location: 461828-462296 bp Feature: domain Description: INTN1 _C_like Location: 461 828-462296 bp Feature: gene Location: 462864-464672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463128-463950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4631 28-463950 bp Feature: domain Description: Intron_maturas2 Location: 464076-464331 bp Feature: domain Description: Intron_maturas2 Location: 464076-464331 bp Feature: gene Location: 464769-465248 bp Feature: domain Description: COG3943 Location: 464925-465174 bp Feature: domain Description: COG3943 Location: 464925-4651 74 bp Feature: gene Location: 465326-465628 bp Feature: domain Description: HTH_17 Location: 465461-465590 bp Feature: domain Description: HTH_1 7 Location: 465461 -465590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein ), HTH_17 (pfam12728)

Seq: NALH01000014.1 Bacteroides dorei isolate LMAG:42 MEG_42_14, whole genome shotgun sequence (562759 bp)
Overview 1 RT 1: 220920-232249 bp 2 RT 2: 559037-562572 bp Neighborhood of RT #1 [220920, 232254] OMP_RagA_SusC Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 OMP_RagA_SusC Neighborhood of RT #2 [559037, 562718] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 Feature: gene Location: 220920-223955 bp Feature: domain Description: OMP_RagA_SusC Location: 220995-223947 bp Feature: domain Description: OMP_RagA_SusC Location: 2 2 0995-2 2 3947 bp Feature: gene Location: 224325-225455 bp Feature: domain Description: Arm-DNA-bind_5 Location: 224352-224607 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 2 4352 -2 2 4607 bp Feature: domain Description: Phage_int_SAM_5 Location: 224640-224925 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 2 4640-2 2 492 5 bp Feature: domain Description: INTN1_C_like Location: 224964-225429 bp Feature: domain Description: INTN1_C_like Location: 2 2 4964-2 2 542 9 bp Feature: gene Location: 226006-227814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226270-227092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 62 70-2 2 7092 bp Feature: domain Description: Intron_maturas2 Location: 227218-227473 bp Feature: domain Description: Intron_maturas2 Location: 2 2 72 18-2 2 7473 bp Feature: gene Location: 228120-228356 bp Feature: gene Location: 229363-232254 bp Feature: domain Description: OMP_RagA_SusC Location: 229366-232249 bp Feature: domain Description: OMP_RagA_SusC Location: 2 2 9366-2 32 2 49 bp Feature: gene Location: 559037-559171 bp Feature: gene Location: 559388-560554 bp Feature: domain Description: Arm-DNA-bind_5 Location: 559418-559673 bp Feature: domain Description: Arm-DNA-bind_5 Location: 559418-559673 bp Feature: domain Description: Phage_int_SAM_5 Location: 559715-560030 bp Feature: domain Description: Phage_int_SAM_5 Location: 559715-560030 bp Feature: domain Description: INTN1_C_like Location: 560069-560537 bp Feature: domain Description: INTN1_C_like Location: 560069-560537 bp Feature: gene Location: 561105-562718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561369-562191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561369-562 191 bp Feature: domain Description: Intron_maturas2 Location: 562317-562572 bp Feature: domain Description: Intron_maturas2 Location: 562 317-562 572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348)

Seq: NALH01000017.1 Bacteroides dorei isolate LMAG:42 MEG_42_17, whole genome shotgun sequence (830229 bp)
Overview 1 RT 1: 143049-150860 bp 2 RT 2: 372857-378948 bp 3 RT 3: 663837-669073 bp Neighborhood of RT #1 [143049, 150860] trmE Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 Neighborhood of RT #2 [372857, 378948] PurF PurF Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 Neighborhood of RT #3 [663837, 669189] RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like WbbJ Feature: gene Location: 143049-144551 bp Feature: domain Description: trmE Location: 143061-144549 bp Feature: domain Description: trmE Location: 143 061-144549 bp Feature: gene Location: 144834-145970 bp Feature: domain Description: Arm-DNA-bind_5 Location: 144879-145083 bp Feature: domain Description: Arm-DNA-bind_5 Location: 144879-145083 bp Feature: domain Description: Phage_int_SAM_5 Location: 145119-145446 bp Feature: domain Description: Phage_int_SAM_5 Location: 145119-145446 bp Feature: domain Description: INTN1_C_like Location: 145503-145953 bp Feature: domain Description: INTN1_C_like Location: 145503 -145953 bp Feature: gene Location: 146521-148329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146785-147607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146785-147607 bp Feature: domain Description: Intron_maturas2 Location: 147733-147988 bp Feature: domain Description: Intron_maturas2 Location: 14773 3 -147988 bp Feature: gene Location: 148508-149980 bp Feature: gene Location: 150069-150860 bp Feature: gene Location: 372857-374263 bp Feature: domain Description: PurF Location: 372863-374063 bp Feature: domain Description: PurF Location: 3 72863 -3 74063 bp Feature: domain Description: PurF Location: 374126-374252 bp Feature: domain Description: PurF Location: 3 74126-3 74252 bp Feature: gene Location: 374566-375726 bp Feature: domain Description: Arm-DNA-bind_5 Location: 374611-374851 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3 74611-3 74851 bp Feature: domain Description: Phage_int_SAM_5 Location: 374923-375205 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 74923 -3 75205 bp Feature: domain Description: INTN1_C_like Location: 375247-375709 bp Feature: domain Description: INTN1_C_like Location: 3 75247-3 75709 bp Feature: gene Location: 376277-378085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376541-377363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 76541-3 773 63 bp Feature: domain Description: Intron_maturas2 Location: 377489-377744 bp Feature: domain Description: Intron_maturas2 Location: 3 77489-3 77744 bp Feature: gene Location: 378294-378677 bp Feature: gene Location: 378724-378948 bp Feature: gene Location: 663837-664145 bp Feature: gene Location: 664166-664681 bp Feature: gene Location: 664778-666586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665042-665864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665042-665864 bp Feature: domain Description: Intron_maturas2 Location: 665990-666245 bp Feature: domain Description: Intron_maturas2 Location: 665990-666245 bp Feature: gene Location: 667137-668303 bp Feature: domain Description: Arm-DNA-bind_5 Location: 667173-667422 bp Feature: domain Description: Arm-DNA-bind_5 Location: 667173 -667422 bp Feature: domain Description: Phage_int_SAM_5 Location: 667461-667767 bp Feature: domain Description: Phage_int_SAM_5 Location: 667461-667767 bp Feature: domain Description: INTN1_C_like Location: 667821-668286 bp Feature: domain Description: INTN1_C_like Location: 667821-668286 bp Feature: gene Location: 668572-669189 bp Feature: domain Description: WbbJ Location: 668686-669073 bp Feature: domain Description: WbbJ Location: 668686-669073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trmE (PRK05291), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), PurF (COG0034), WbbJ (COG0110)

Seq: NALH01000020.1 Bacteroides dorei isolate LMAG:42 MEG_42_20, whole genome shotgun sequence (62364 bp)
Overview 1 RT 1: 9083-14779 bp Neighborhood of RT #1 [9083, 15504] Y2_Tnp RVT-Retrons REC Feature: gene Location: 9083-9589 bp Feature: domain Description: Y2_Tnp Location: 9131-9377 bp Feature: domain Description: Y2_Tnp Location: 9131-9377 bp Feature: gene Location: 9478-9768 bp Feature: gene Location: 10196-11980 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10382-10979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10382-10979 bp Feature: gene Location: 11984-13027 bp Feature: gene Location: 13027-15504 bp Feature: domain Description: REC Location: 14419-14779 bp Feature: domain Description: REC Location: 14 4 19-14 779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, REC (smart00448), Y2_Tnp (pfam04986)