myRT

myRT report for GCA_008680545.1_ASM868054v1

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Seq: NALA01000013.1 Eubacterium sp. LMAG:35 MEG_35_13, whole genome shotgun sequence (710574 bp)
Overview 1 RT 1: 22884-27509 bp 2 RT 2: 255806-259930 bp 3 RT 3: 424106-428420 bp 4 RT 4: 504261-508296 bp 5 RT 5: 520614-528022 bp 6 RT 6: 594106-601200 bp 7 RT 7: 669199-678242 bp 8 RT 8: 684154-688566 bp Neighborhood of RT #1 [22884, 27520] group_II_RT_mat RVT-GII PRK02260 secA Neighborhood of RT #2 [255806, 259980] group_II_RT_mat RVT-GII YdiL COG4487 DUF2130 Neighborhood of RT #3 [424106, 428479] PulF PulF RVT-GII PHA02517 HTH_Tnp_1 Neighborhood of RT #4 [504261, 508304] group_II_RT_mat RVT-GII GlnQ PLN02538 Neighborhood of RT #5 [520614, 528024] asnC MurNAc-LAA RVT-GII Uup ABC_tran_CTD infC Neighborhood of RT #6 [594106, 601217] group_II_RT_mat RVT-GII group_II_RT_mat RVT-GII MdlB MdlB Neighborhood of RT #7 [669199, 678250] RVT-GII InsA DDE_Tnp_IS1595 DDE_Tnp_IS1595 CPBP RVT-GII rplU YsxB-like Neighborhood of RT #8 [684154, 688577] group_II_RT_mat RVT-GII PRK02304 SpoT Feature: gene Location: 22884-23117 bp Feature: gene Location: 23155-23433 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 23260-23431 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 23260-23431 bp Feature: gene Location: 23472-24446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23478-24066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23478-24066 bp Feature: gene Location: 24548-25024 bp Feature: domain Description: PRK02260 Location: 24563-25016 bp Feature: domain Description: PRK02260 Location: 24563-2501 6 bp Feature: gene Location: 25124-27520 bp Feature: domain Description: secA Location: 25127-27509 bp Feature: domain Description: secA Location: 251 27-27509 bp Feature: gene Location: 255806-256039 bp Feature: gene Location: 256077-256355 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 256182-256353 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2561 82-256353 bp Feature: gene Location: 256394-257368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256400-256988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256400-256988 bp Feature: gene Location: 257486-258307 bp Feature: domain Description: YdiL Location: 257501-258131 bp Feature: domain Description: YdiL Location: 257501 -2581 31 bp Feature: gene Location: 258340-259980 bp Feature: domain Description: COG4487 Location: 258343-258841 bp Feature: domain Description: COG4487 Location: 258343-258841 bp Feature: domain Description: DUF2130 Location: 259153-259930 bp Feature: domain Description: DUF21 30 Location: 2591 53-259930 bp Feature: gene Location: 424106-424447 bp Feature: domain Description: PulF Location: 424112-424445 bp Feature: domain Description: PulF Location: 4241 1 2-424445 bp Feature: gene Location: 424651-425304 bp Feature: domain Description: PulF Location: 424654-425299 bp Feature: domain Description: PulF Location: 424654-425299 bp Feature: gene Location: 425727-427112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426069-426732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 426069-426732 bp Feature: gene Location: 427311-428129 bp Feature: domain Description: PHA02517 Location: 427335-428121 bp Feature: domain Description: PHA0251 7 Location: 427335-4281 21 bp Feature: gene Location: 428186-428479 bp Feature: domain Description: HTH_Tnp_1 Location: 428198-428420 bp Feature: domain Description: HTH_Tnp_1 Location: 4281 98-428420 bp Feature: gene Location: 504261-504494 bp Feature: gene Location: 504532-504810 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 504637-504808 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 504637-504808 bp Feature: gene Location: 504849-505823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504855-505443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504855-505443 bp Feature: gene Location: 505925-506662 bp Feature: domain Description: GlnQ Location: 505937-506651 bp Feature: domain Description: GlnQ Location: 505937-506651 bp Feature: gene Location: 506766-508304 bp Feature: domain Description: PLN02538 Location: 506775-508296 bp Feature: domain Description: PLN02538 Location: 506775-508296 bp Feature: gene Location: 520614-521969 bp Feature: domain Description: asnC Location: 520644-521961 bp Feature: domain Description: asnC Location: 520644-521 961 bp Feature: gene Location: 522027-523313 bp Feature: domain Description: MurNAc-LAA Location: 522669-523293 bp Feature: domain Description: MurNAc-LAA Location: 522669-523293 bp Feature: gene Location: 523741-525126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524083-524746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524083-524746 bp Feature: gene Location: 525225-527087 bp Feature: domain Description: Uup Location: 525234-526803 bp Feature: domain Description: Uup Location: 525234-526803 bp Feature: domain Description: ABC_tran_CTD Location: 526890-527067 bp Feature: domain Description: ABC_tran_CTD Location: 526890-527067 bp Feature: gene Location: 527473-528024 bp Feature: domain Description: infC Location: 527518-528022 bp Feature: domain Description: infC Location: 52751 8-528022 bp Feature: gene Location: 594106-594339 bp Feature: gene Location: 594377-594655 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 594482-594653 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 594482-594653 bp Feature: gene Location: 594694-595668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594700-595288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594700-595288 bp Feature: gene Location: 596010-596243 bp Feature: gene Location: 596281-596559 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 596386-596557 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 596386-596557 bp Feature: gene Location: 596598-597572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596604-597192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596604-5971 92 bp Feature: gene Location: 597674-599404 bp Feature: domain Description: MdlB Location: 597680-599378 bp Feature: domain Description: MdlB Location: 597680-599378 bp Feature: gene Location: 599394-601217 bp Feature: domain Description: MdlB Location: 599427-601200 bp Feature: domain Description: MdlB Location: 599427-601 200 bp Feature: gene Location: 669199-669432 bp Feature: gene Location: 669470-669754 bp Feature: gene Location: 669805-671100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670060-670750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670060-670750 bp Feature: gene Location: 672157-673077 bp Feature: domain Description: InsA Location: 672265-672505 bp Feature: domain Description: InsA Location: 672265-672505 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 672517-672940 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 67251 7-672940 bp Feature: gene Location: 673334-673801 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 673400-673664 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 673400-673664 bp Feature: gene Location: 675100-675543 bp Feature: domain Description: CPBP Location: 675115-675349 bp Feature: domain Description: CPBP Location: 6751 1 5-675349 bp Feature: gene Location: 675717-676001 bp Feature: gene Location: 676052-677347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676307-676997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676307-676997 bp Feature: gene Location: 677631-677933 bp Feature: domain Description: rplU Location: 677634-677928 bp Feature: domain Description: rplU Location: 677634-677928 bp Feature: gene Location: 677936-678250 bp Feature: domain Description: YsxB-like Location: 677939-678242 bp Feature: domain Description: YsxB-like Location: 677939-678242 bp Feature: gene Location: 684154-684387 bp Feature: gene Location: 684425-684703 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 684530-684701 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 684530-684701 bp Feature: gene Location: 684742-685716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684748-685336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684748-685336 bp Feature: gene Location: 685818-686339 bp Feature: domain Description: PRK02304 Location: 685821-686331 bp Feature: domain Description: PRK02304 Location: 685821 -686331 bp Feature: gene Location: 686373-688577 bp Feature: domain Description: SpoT Location: 686379-688566 bp Feature: domain Description: SpoT Location: 686379-688566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, PRK02260 (S-ribosylhomocysteine lyase), secA (TIGR00963), YdiL (COG1266), COG4487 (Uncharacterized protein, contains DUF2130 domain ), DUF2130 (pfam09903), PulF (COG1459), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527)
GlnQ (COG1126), PLN02538 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase), asnC (PRK03932), MurNAc-LAA (cl02713), Uup (COG0488), ABC_tran_CTD (pfam16326), infC (TIGR00168), MdlB (COG1132), InsA (COG3677), DDE_Tnp_IS1595 (pfam12762)
CPBP, rplU (PRK05573), YsxB-like, PRK02304 (adenine phosphoribosyltransferase; Provisional), SpoT (COG0317)

Seq: NALA01000018.1 Eubacterium sp. LMAG:35 MEG_35_18, whole genome shotgun sequence (155168 bp)
Overview 1 RT 1: 83185-86730 bp Neighborhood of RT #1 [83185, 86747] sorbose_phosphate_red group_II_RT_mat RVT-GII GlpR Feature: gene Location: 83185-84351 bp Feature: domain Description: sorbose_phosphate_red Location: 83188-84343 bp Feature: domain Description: sorbose_phosphate_red Location: 83188-84343 bp Feature: gene Location: 85045-85293 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 85117-85291 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 85117-852 91 bp Feature: gene Location: 85384-85917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85402-85885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85402 -85885 bp Feature: gene Location: 86058-86306 bp Feature: gene Location: 86586-86747 bp Feature: domain Description: GlpR Location: 86622-86730 bp Feature: domain Description: GlpR Location: 8662 2 -86730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sorbose_phosphate_red (cd08238), group_II_RT_mat (TIGR04416), RVT-GII, GlpR (COG1349)

Seq: NALA01000019.1 Eubacterium sp. LMAG:35 MEG_35_19, whole genome shotgun sequence (21587 bp)
Overview 1 RT 1: 1029-4161 bp 2 RT 2: 10861-17259 bp Neighborhood of RT #1 [1029, 4161] group_II_RT_mat RVT-GII KOG4768 Neighborhood of RT #2 [10861, 17396] VirD4 RVT-GII DDE_Tnp_1 Feature: gene Location: 1029-1208 bp Feature: gene Location: 1508-1900 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1670-1892 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1670-1892 bp Feature: gene Location: 1906-2643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1912-2626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1912-2626 bp Feature: gene Location: 2612-3157 bp Feature: domain Description: KOG4768 Location: 2615-3059 bp Feature: domain Description: KOG4768 Location: 2615-3 059 bp Feature: gene Location: 3409-4161 bp Feature: gene Location: 10861-12645 bp Feature: domain Description: VirD4 Location: 11041-12487 bp Feature: domain Description: VirD4 Location: 11041-12487 bp Feature: gene Location: 12727-12990 bp Feature: gene Location: 13546-14889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13828-14638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 828-1463 8 bp Feature: gene Location: 15092-16069 bp Feature: gene Location: 16137-17396 bp Feature: domain Description: DDE_Tnp_1 Location: 16515-17259 bp Feature: domain Description: DDE_Tnp_1 Location: 16515-17259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), VirD4 (COG3505), DDE_Tnp_1 (pfam01609)

Seq: NALA01000021.1 Eubacterium sp. LMAG:35 MEG_35_21, whole genome shotgun sequence (234826 bp)
Overview 1 RT 1: 104409-107786 bp Neighborhood of RT #1 [104409, 107786] PRK12767 ADPRase_NUDT5 RVT-GII group_II_RT_mat Feature: gene Location: 104409-105605 bp Feature: domain Description: PRK12767 Location: 104637-105285 bp Feature: domain Description: PRK12767 Location: 104 637-105285 bp Feature: gene Location: 105610-106122 bp Feature: domain Description: ADPRase_NUDT5 Location: 105709-106111 bp Feature: domain Description: ADPRase_NUDT5 Location: 105709-106111 bp Feature: gene Location: 106224-107198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106230-106818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106230-106818 bp Feature: gene Location: 107237-107515 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 107342-107513 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 10734 2-107513 bp Feature: gene Location: 107553-107786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12767 (carbamoyl phosphate synthase-like protein; Provisional), ADPRase_NUDT5 (cd03424), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: NALA01000004.1 Eubacterium sp. LMAG:35 MEG_35_4, whole genome shotgun sequence (69359 bp)
Overview 1 RT 1: 29414-33219 bp Neighborhood of RT #1 [29414, 33425] GntR KduI RVT-GII RMtype1_S_Ara36733I_TRD1-CR1_like Feature: gene Location: 29414-30076 bp Feature: domain Description: GntR Location: 29423-30023 bp Feature: domain Description: GntR Location: 29423-30023 bp Feature: gene Location: 30111-30929 bp Feature: domain Description: KduI Location: 30150-30879 bp Feature: domain Description: KduI Location: 3015 0-30879 bp Feature: gene Location: 31031-32005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31037-31625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31037-31625 bp Feature: gene Location: 32183-32638 bp Feature: gene Location: 32631-33425 bp Feature: domain Description: RMtype1_S_Ara36733I_TRD1-CR1_like Location: 32691-33219 bp Feature: domain Description: RMtype1_S_Ara36733I_TRD1-CR1_like Location: 32691-33219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GntR (pfam00392), KduI (pfam04962), RVT-GII, RMtype1_S_Ara36733I_TRD1-CR1_like (cd17268)

Seq: NALA01000005.1 Eubacterium sp. LMAG:35 MEG_35_5, whole genome shotgun sequence (246584 bp)
Overview 1 RT 1: 33971-38039 bp 2 RT 2: 52925-55443 bp 3 RT 3: 130008-134021 bp Neighborhood of RT #1 [33971, 38062] MarR group_II_RT_mat RVT-GII YitT Hydrolase_3 Neighborhood of RT #2 [52925, 55502] group_II_RT_mat RVT-GII PHA02517 HTH_Tnp_1 Neighborhood of RT #3 [130008, 134158] RimL RVT-GII YhcF CcmA Feature: gene Location: 33971-34393 bp Feature: domain Description: MarR Location: 34049-34373 bp Feature: domain Description: MarR Location: 34049-34373 bp Feature: gene Location: 34898-35269 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 35096-35267 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 35096 -3526 7 bp Feature: gene Location: 35308-36282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35314-35902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35314-35902 bp Feature: gene Location: 36381-37256 bp Feature: domain Description: YitT Location: 36390-37233 bp Feature: domain Description: YitT Location: 36 390-37233 bp Feature: gene Location: 37256-38062 bp Feature: domain Description: Hydrolase_3 Location: 37271-38039 bp Feature: domain Description: Hydrolase_3 Location: 37271-38039 bp Feature: gene Location: 52925-53158 bp Feature: gene Location: 53196-53474 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 53301-53472 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 53301-53472 bp Feature: gene Location: 53513-54319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53519-54107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53519-54107 bp Feature: gene Location: 54334-55053 bp Feature: domain Description: PHA02517 Location: 54340-55045 bp Feature: domain Description: PHA02517 Location: 54340-55045 bp Feature: gene Location: 55209-55502 bp Feature: domain Description: HTH_Tnp_1 Location: 55221-55443 bp Feature: domain Description: HTH_Tnp_1 Location: 55221-55443 bp Feature: gene Location: 130008-130541 bp Feature: domain Description: RimL Location: 130044-130500 bp Feature: domain Description: RimL Location: 130044-130500 bp Feature: gene Location: 130759-131043 bp Feature: gene Location: 131094-132389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131349-132039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131349-132039 bp Feature: gene Location: 132997-133407 bp Feature: domain Description: YhcF Location: 133045-133402 bp Feature: domain Description: YhcF Location: 133045-133402 bp Feature: gene Location: 133412-134158 bp Feature: domain Description: CcmA Location: 133451-134021 bp Feature: domain Description: CcmA Location: 133451-134021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), group_II_RT_mat (TIGR04416), RVT-GII, YitT (COG1284), Hydrolase_3 (pfam08282), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), RimL (COG1670), YhcF (COG1725), CcmA (COG4133)

Seq: NALA01000008.1 Eubacterium sp. LMAG:35 MEG_35_8, whole genome shotgun sequence (197129 bp)
Overview 1 RT 1: 3954-8011 bp Neighborhood of RT #1 [3954, 8019] group_II_RT_mat RVT-GII Bacterial_PFK PRK06354 Feature: gene Location: 3954-4187 bp Feature: gene Location: 4225-4503 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4330-4501 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4330-4501 bp Feature: gene Location: 4542-5516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4548-5136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4548-5136 bp Feature: gene Location: 5618-6580 bp Feature: domain Description: Bacterial_PFK Location: 5627-6575 bp Feature: domain Description: Bacterial_PFK Location: 5627 -657 5 bp Feature: gene Location: 6607-8019 bp Feature: domain Description: PRK06354 Location: 6613-8011 bp Feature: domain Description: PRK06354 Location: 6613-8011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, Bacterial_PFK (cd00763), PRK06354 (pyruvate kinase; Provisional)