myRT

myRT report for GCA_008680735.1_ASM868073v1

Download annotations/find similar RTs

Seq: NAKR01000002.1 Ruminococcus faecis isolate LMAG:26 MEG_26_2, whole genome shotgun sequence (1769999 bp)
Overview 1 RT 1: 530993-536879 bp 2 RT 2: 546287-549369 bp 3 RT 3: 1153352-1159060 bp 4 RT 4: 1356049-1359409 bp Neighborhood of RT #1 [530993, 537397] DUF1533 DUF1533 DUF1533 RVT-GII RVT-GII GIIM VirD4 Neighborhood of RT #2 [546287, 549410] RVT-GII RVT-GII Sig70_bacteroi1 Neighborhood of RT #3 [1153352, 1159062] UbiE Transglut_core RVT-GII HNHc LysR PRK07116 Neighborhood of RT #4 [1356049, 1359429] BaeS OmpR RVT-GII PHA02517 InsE Feature: gene Location: 530993-534421 bp Feature: domain Description: DUF1533 Location: 531260-531473 bp Feature: domain Description: DUF1 533 Location: 531 260-531 473 bp Feature: domain Description: DUF1533 Location: 531884-531962 bp Feature: domain Description: DUF1 533 Location: 531 884-531 962 bp Feature: domain Description: DUF1533 Location: 532061-532103 bp Feature: domain Description: DUF1 533 Location: 532061 -5321 03 bp Feature: gene Location: 534725-534919 bp Feature: gene Location: 535011-535610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535302-535608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535302-535608 bp Feature: gene Location: 535695-536300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535698-535935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535698-535935 bp Feature: domain Description: GIIM Note: maturase Location: 536016-536241 bp Feature: domain Description: GIIM Note: maturase Location: 53601 6-536241 bp Feature: gene Location: 536375-536530 bp Feature: gene Location: 536618-537397 bp Feature: domain Description: VirD4 Location: 536624-536879 bp Feature: domain Description: VirD4 Location: 536624-536879 bp Feature: gene Location: 546287-546565 bp Feature: gene Location: 546896-547804 bp Feature: gene Location: 547892-548062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547997-548060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547997-548060 bp Feature: gene Location: 548081-548245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548087-548192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 548087-5481 92 bp Feature: gene Location: 548255-548521 bp Feature: gene Location: 548961-549410 bp Feature: domain Description: Sig70_bacteroi1 Location: 548985-549369 bp Feature: domain Description: Sig70_bacteroi1 Location: 548985-549369 bp Feature: gene Location: 1153352-1154095 bp Feature: domain Description: UbiE Location: 1153430-1153889 bp Feature: domain Description: UbiE Location: 1 1 53430-1 1 53889 bp Feature: gene Location: 1154115-1154528 bp Feature: domain Description: Transglut_core Location: 1154157-1154487 bp Feature: domain Description: Transglut_core Location: 1 1 541 57-1 1 54487 bp Feature: gene Location: 1155230-1157140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1155563-1156301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 55563-1 1 56301 bp Feature: domain Description: HNHc Note: nucleases Location: 1156856-1157021 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 56856-1 1 57021 bp Feature: gene Location: 1157692-1158465 bp Feature: domain Description: LysR Location: 1157695-1158454 bp Feature: domain Description: LysR Location: 1 1 57695-1 1 58454 bp Feature: gene Location: 1158592-1159062 bp Feature: domain Description: PRK07116 Location: 1158598-1159060 bp Feature: domain Description: PRK071 1 6 Location: 1 1 58598-1 1 59060 bp Feature: gene Location: 1356049-1356975 bp Feature: domain Description: BaeS Location: 1356145-1356955 bp Feature: domain Description: BaeS Location: 1 3561 45-1 356955 bp Feature: gene Location: 1356978-1357685 bp Feature: domain Description: OmpR Location: 1357005-1357680 bp Feature: domain Description: OmpR Location: 1 357005-1 357680 bp Feature: gene Location: 1357835-1357999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1357877-1357997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 357877-1 357997 bp Feature: gene Location: 1358207-1359121 bp Feature: domain Description: PHA02517 Location: 1358303-1359092 bp Feature: domain Description: PHA0251 7 Location: 1 358303-1 359092 bp Feature: gene Location: 1359118-1359429 bp Feature: domain Description: InsE Location: 1359154-1359409 bp Feature: domain Description: InsE Location: 1 3591 54-1 359409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1533 (pfam07550), RVT-GII, GIIM (pfam08388), VirD4 (COG3505), Sig70_bacteroi1 (TIGR02985), UbiE (COG2226), Transglut_core (pfam01841), HNHc (smart00507), LysR (COG0583), PRK07116 (flavodoxin; Provisional)
BaeS (COG0642), OmpR (COG0745), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: NAKR01000003.1 Ruminococcus faecis isolate LMAG:26 MEG_26_3, whole genome shotgun sequence (501966 bp)
Overview 1 RT 1: 43744-52854 bp Neighborhood of RT #1 [43744, 53483] IscR HDGYP RVT-GII HTH_30 group_II_RT_mat SpaA CollagenBindB SpaA Feature: gene Location: 43744-45231 bp Feature: domain Description: IscR Location: 43774-44176 bp Feature: domain Description: IscR Location: 43774-44176 bp Feature: domain Description: HDGYP Location: 44476-45220 bp Feature: domain Description: HDGYP Location: 44476-452 2 0 bp Feature: gene Location: 45335-45655 bp Feature: gene Location: 46006-46494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46015-46240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46015-462 40 bp Feature: domain Description: HTH_30 Location: 46297-46453 bp Feature: domain Description: HTH_30 Location: 462 97-46453 bp Feature: gene Location: 46507-46695 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 46549-46693 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 46549-46693 bp Feature: gene Location: 47352-53483 bp Feature: domain Description: SpaA Location: 51804-52008 bp Feature: domain Description: SpaA Location: 51804-52 008 bp Feature: domain Description: CollagenBindB Location: 52182-52404 bp Feature: domain Description: CollagenBindB Location: 52 182 -52 404 bp Feature: domain Description: SpaA Location: 52599-52854 bp Feature: domain Description: SpaA Location: 52 599-52 854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, HTH_30 (pfam13556), group_II_RT_mat (TIGR04416), SpaA (pfam17802), CollagenBindB (cl15753)

Seq: NAKR01000005.1 Ruminococcus faecis isolate LMAG:26 MEG_26_5, whole genome shotgun sequence (594528 bp)
Overview 1 RT 1: 316777-319636 bp 2 RT 2: 362816-367389 bp Neighborhood of RT #1 [316777, 319656] group_II_RT_mat RVT-GII DUF3784 Neighborhood of RT #2 [362816, 367389] RVT-DGRs Feature: gene Location: 316777-316905 bp Feature: gene Location: 317557-318036 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 317560-317944 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 17560-3 17944 bp Feature: gene Location: 318213-318851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318468-318840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 18468-3 18840 bp Feature: gene Location: 318965-319114 bp Feature: gene Location: 319342-319656 bp Feature: domain Description: DUF3784 Location: 319366-319636 bp Feature: domain Description: DUF3 784 Location: 3 193 66-3 1963 6 bp Feature: gene Location: 362816-363007 bp Feature: gene Location: 363000-363146 bp Feature: gene Location: 363426-364685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 363711-364443 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 63 711-3 64443 bp Feature: gene Location: 364849-364998 bp Feature: gene Location: 365197-367389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, DUF3784 (pfam12650), RVT-DGRs