myRT

myRT report for GCA_008680865.1_ASM868086v1

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Seq: NAKJ01000011.1 Bacteroides plebeius isolate LMAG:18 MEG_18_11, whole genome shotgun sequence (150414 bp)
Overview 1 RT 1: 45264-50244 bp Neighborhood of RT #1 [45264, 50270] COG1373 RVT_N RVT-GII GIIM NMN_transporter thi_PPkinase Feature: gene Location: 45264-46439 bp Feature: domain Description: COG1373 Location: 45279-46320 bp Feature: domain Description: COG1 373 Location: 45279-46320 bp Feature: gene Location: 46662-46979 bp Feature: gene Location: 47053-48708 bp Feature: RT Description: RVT_N Location: 47107-47350 bp Feature: RT Description: RVT_N Location: 471 07-47350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47395-48040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47395-48040 bp Feature: domain Description: GIIM Note: maturase Location: 48091-48325 bp Feature: domain Description: GIIM Note: maturase Location: 48091 -48325 bp Feature: gene Location: 48871-49602 bp Feature: domain Description: NMN_transporter Location: 49009-49558 bp Feature: domain Description: NMN_transporter Location: 49009-49558 bp Feature: gene Location: 49608-50270 bp Feature: domain Description: thi_PPkinase Location: 49668-50244 bp Feature: domain Description: thi_PPkinase Location: 49668-50244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NMN_transporter (pfam04973), thi_PPkinase (TIGR01378)

Seq: NAKJ01000012.1 Bacteroides plebeius isolate LMAG:18 MEG_18_12, whole genome shotgun sequence (868233 bp)
Overview 1 RT 1: 9590-13827 bp 2 RT 2: 273120-277243 bp 3 RT 3: 744456-748022 bp 4 RT 4: 838453-843913 bp Neighborhood of RT #1 [9590, 13827] RVT-DGRs Neighborhood of RT #2 [273120, 277257] COG3177 RVT_N RVT-GII GIIM TDP2 Neighborhood of RT #3 [744456, 748022] RVT-DGRs Neighborhood of RT #4 [838453, 843913] DNA_processg_A RVT-Retrons Feature: gene Location: 9590-9907 bp Feature: gene Location: 9904-10281 bp Feature: gene Location: 10262-11302 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10469-11171 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10469-11171 bp Feature: gene Location: 11600-13027 bp Feature: gene Location: 13066-13827 bp Feature: gene Location: 273120-273320 bp Feature: domain Description: COG3177 Location: 273138-273267 bp Feature: domain Description: COG3177 Location: 2 73138-2 732 67 bp Feature: gene Location: 273721-273867 bp Feature: gene Location: 273864-275519 bp Feature: RT Description: RVT_N Location: 273918-274161 bp Feature: RT Description: RVT_N Location: 2 73918-2 74161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 274206-274851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 742 06-2 74851 bp Feature: domain Description: GIIM Note: maturase Location: 274902-275136 bp Feature: domain Description: GIIM Note: maturase Location: 2 74902 -2 75136 bp Feature: gene Location: 275593-275910 bp Feature: gene Location: 276226-277257 bp Feature: domain Description: TDP2 Location: 276301-277243 bp Feature: domain Description: TDP2 Location: 2 76301-2 772 43 bp Feature: gene Location: 744456-744830 bp Feature: gene Location: 744967-745137 bp Feature: gene Location: 745197-746327 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 745476-746154 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 745476-746154 bp Feature: gene Location: 746402-746611 bp Feature: gene Location: 746658-748022 bp Feature: gene Location: 838453-839124 bp Feature: gene Location: 839139-840065 bp Feature: domain Description: DNA_processg_A Location: 839343-839820 bp Feature: domain Description: DNA_processg_A Location: 839343-83982 0 bp Feature: gene Location: 840538-841998 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 840739-841369 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 840739-841369 bp Feature: gene Location: 842000-842917 bp Feature: gene Location: 843371-843913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TDP2 (cd09080), DNA_processg_A (pfam02481), RVT-Retrons

Seq: NAKJ01000003.1 Bacteroides plebeius isolate LMAG:18 MEG_18_3, whole genome shotgun sequence (322154 bp)
Overview 1 RT 1: 100522-106307 bp Neighborhood of RT #1 [100522, 106315] secG YeiB RVT-GII GIIM IS285 YotD Rubrerythrin_like Feature: gene Location: 100522-100896 bp Feature: domain Description: secG Location: 100525-100738 bp Feature: domain Description: secG Location: 100525-10073 8 bp Feature: gene Location: 101019-102203 bp Feature: domain Description: YeiB Location: 101028-102186 bp Feature: domain Description: YeiB Location: 101028-102186 bp Feature: gene Location: 102680-104080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103016-103631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 016-103 63 1 bp Feature: domain Description: GIIM Note: maturase Location: 103685-103916 bp Feature: domain Description: GIIM Note: maturase Location: 103 685-103 916 bp Feature: gene Location: 104370-105602 bp Feature: domain Description: IS285 Location: 104439-105594 bp Feature: domain Description: IS285 Location: 10443 9-105594 bp Feature: gene Location: 105764-106315 bp Feature: domain Description: YotD Location: 105773-105869 bp Feature: domain Description: YotD Location: 105773 -105869 bp Feature: domain Description: Rubrerythrin_like Location: 105944-106307 bp Feature: domain Description: Rubrerythrin_like Location: 105944-1063 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT secG (TIGR00810), YeiB (COG2311), RVT-GII, GIIM (pfam08388), IS285 (COG3328), YotD (COG1592), Rubrerythrin_like (cd01046)

Seq: NAKJ01000009.1 Bacteroides plebeius isolate LMAG:18 MEG_18_9, whole genome shotgun sequence (386000 bp)
Overview 1 RT 1: 289214-295788 bp Neighborhood of RT #1 [289214, 295940] HTH_Tnp_1 PHA02517 RVT-GII GIIM DAP2 DAP2 SusD Feature: gene Location: 289214-289570 bp Feature: domain Description: HTH_Tnp_1 Location: 289217-289469 bp Feature: domain Description: HTH_Tnp_1 Location: 289217-2894 69 bp Feature: gene Location: 289606-290475 bp Feature: domain Description: PHA02517 Location: 289780-290428 bp Feature: domain Description: PHA02517 Location: 289780-2904 28 bp Feature: gene Location: 290795-292195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291131-291746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291131-29174 6 bp Feature: domain Description: GIIM Note: maturase Location: 291800-292031 bp Feature: domain Description: GIIM Note: maturase Location: 291800-292031 bp Feature: gene Location: 292429-294423 bp Feature: domain Description: DAP2 Location: 292654-293125 bp Feature: domain Description: DAP2 Location: 292654 -293125 bp Feature: domain Description: DAP2 Location: 293683-294406 bp Feature: domain Description: DAP2 Location: 293683-294 4 06 bp Feature: gene Location: 294426-295940 bp Feature: domain Description: SusD Location: 294744-295788 bp Feature: domain Description: SusD Location: 294 74 4 -295788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DAP2 (COG1506), SusD (NF033071)