myRT

myRT report for GCA_008680875.1_ASM868087v1

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Seq: NAKL01000017.1 Bacteroides vulgatus isolate LMAG:20 MEG_20_17, whole genome shotgun sequence (311470 bp)
Overview 1 RT 1: 16845-22118 bp 2 RT 2: 25937-30142 bp 3 RT 3: 171443-181786 bp 4 RT 4: 298317-300229 bp Neighborhood of RT #1 [16845, 22118] integrase_gron integrase_gron COG5620 RVT_N RVT-GII GIIM Neighborhood of RT #2 [25937, 30142] RVT_N RVT-GII GIIM Neighborhood of RT #3 [171443, 181786] DEXXQc_Upf1-like DEXXQc_Upf1-like AAA_12 PIN_VapC_PhoHL-ATPase PRK00087 PRK00087 RVT-AbiP2 HTH_26 Neighborhood of RT #4 [298317, 300229] RVT-DGRs Feature: gene Location: 16845-17951 bp Feature: domain Description: integrase_gron Location: 17142-17658 bp Feature: domain Description: integrase_gron Location: 1 71 42-1 7658 bp Feature: domain Description: integrase_gron Location: 17715-17940 bp Feature: domain Description: integrase_gron Location: 1 771 5-1 7940 bp Feature: gene Location: 18061-18651 bp Feature: domain Description: COG5620 Location: 18118-18634 bp Feature: domain Description: COG5620 Location: 1 81 1 8-1 8634 bp Feature: gene Location: 19151-20956 bp Feature: domain Description: RVT_N Location: 19352-19595 bp Feature: domain Description: RVT_N Location: 1 9352-1 9595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19640-20285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9640-20285 bp Feature: domain Description: GIIM Note: maturase Location: 20336-20570 bp Feature: domain Description: GIIM Note: maturase Location: 20336-20570 bp Feature: gene Location: 21127-21558 bp Feature: gene Location: 21669-22118 bp Feature: gene Location: 25937-26635 bp Feature: gene Location: 26670-26882 bp Feature: gene Location: 27427-29232 bp Feature: domain Description: RVT_N Location: 27628-27871 bp Feature: domain Description: RVT_N Location: 27628-27871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27916-28561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2791 6-28561 bp Feature: domain Description: GIIM Note: maturase Location: 28612-28846 bp Feature: domain Description: GIIM Note: maturase Location: 2861 2-28846 bp Feature: gene Location: 29397-29609 bp Feature: gene Location: 29678-30142 bp Feature: gene Location: 171443-173746 bp Feature: domain Description: DEXXQc_Upf1-like Location: 172103-172229 bp Feature: domain Description: DEXXQc_Upf1 -like Location: 1 721 03-1 72229 bp Feature: domain Description: DEXXQc_Upf1-like Location: 172376-172574 bp Feature: domain Description: DEXXQc_Upf1 -like Location: 1 72376-1 72574 bp Feature: domain Description: AAA_12 Location: 172826-173120 bp Feature: domain Description: AAA_1 2 Location: 1 72826-1 731 20 bp Feature: domain Description: PIN_VapC_PhoHL-ATPase Location: 173342-173723 bp Feature: domain Description: PIN_VapC_PhoHL-ATPase Location: 1 73342-1 73723 bp Feature: gene Location: 173750-179344 bp Feature: domain Description: PRK00087 Location: 173831-174041 bp Feature: domain Description: PRK00087 Location: 1 73831 -1 74041 bp Feature: domain Description: PRK00087 Location: 174047-174815 bp Feature: domain Description: PRK00087 Location: 1 74047-1 7481 5 bp Feature: gene Location: 179357-180973 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 179792-180263 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 79792-1 80263 bp Feature: gene Location: 180989-181219 bp Feature: domain Description: HTH_26 Location: 181010-181190 bp Feature: domain Description: HTH_26 Location: 1 81 01 0-1 81 1 90 bp Feature: gene Location: 181427-181786 bp Feature: gene Location: 298317-298550 bp Feature: gene Location: 299079-299291 bp Feature: gene Location: 299291-299590 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 299297-299564 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 299297-299564 bp Feature: gene Location: 299655-299831 bp Feature: gene Location: 299849-300229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT integrase_gron (TIGR02249), COG5620 (Uncharacterized protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DEXXQc_Upf1-like (cd17934), AAA_12 (pfam13087), PIN_VapC_PhoHL-ATPase (cd09883), PRK00087 (bifunctional 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/30S ribosomal protein S1), RVT-AbiP2
HTH_26 (pfam13443), RVT-DGRs

Seq: NAKL01000002.1 Bacteroides vulgatus isolate LMAG:20 MEG_20_2, whole genome shotgun sequence (224176 bp)
Overview 1 RT 1: 59340-62719 bp Neighborhood of RT #1 [59340, 62719] RVT-DGRs Feature: gene Location: 59340-60659 bp Feature: gene Location: 60689-60892 bp Feature: gene Location: 61176-61991 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61509-61833 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61509-61833 bp Feature: gene Location: 61957-62145 bp Feature: gene Location: 62135-62719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs