myRT

myRT report for GCA_008680955.1_ASM868095v1

Download annotations/find similar RTs

Seq: NAKG01000015.1 Dorea longicatena isolate LMAG:15 MEG_15_15, whole genome shotgun sequence (164357 bp)
Overview 1 RT 1: 151740-155354 bp Neighborhood of RT #1 [151740, 155356] Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 151740-152228 bp Feature: domain Description: Phage_holin_4_1 Location: 151779-152139 bp Feature: domain Description: Phage_holin_4_1 Location: 1 51 779-1 521 39 bp Feature: gene Location: 152225-152404 bp Feature: gene Location: 152429-153490 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 152657-153359 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 52657-1 53359 bp Feature: gene Location: 153817-154173 bp Feature: domain Description: Avd_like Location: 153847-154153 bp Feature: domain Description: Avd_like Location: 1 53847-1 541 53 bp Feature: gene Location: 154214-155356 bp Feature: domain Description: PHA00653 Location: 154337-155354 bp Feature: domain Description: PHA00653 Location: 1 54337-1 55354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: NAKG01000002.1 Dorea longicatena isolate LMAG:15 MEG_15_2, whole genome shotgun sequence (169036 bp)
Overview 1 RT 1: 36625-40651 bp Neighborhood of RT #1 [36625, 40651] Avd_like RVT-DGRs DUF4317 Feature: gene Location: 36625-37224 bp Feature: gene Location: 37224-37595 bp Feature: domain Description: Avd_like Location: 37248-37578 bp Feature: domain Description: Avd_like Location: 372 48-37578 bp Feature: gene Location: 37789-38817 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37978-38599 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37978-38599 bp Feature: gene Location: 38936-40063 bp Feature: domain Description: DUF4317 Location: 38939-40049 bp Feature: domain Description: DUF4317 Location: 38939-40049 bp Feature: gene Location: 40073-40651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF4317 (pfam14199)

Seq: NAKG01000003.1 Dorea longicatena isolate LMAG:15 MEG_15_3, whole genome shotgun sequence (462540 bp)
Overview 1 RT 1: 18354-31266 bp Neighborhood of RT #1 [18354, 31625] YodL LPD16 DUF4316 LPD25 KOG1000 RVT-GII YtxK COG4646 Feature: gene Location: 18354-21104 bp Feature: domain Description: YodL Location: 19134-19428 bp Feature: domain Description: YodL Location: 1913 4-19428 bp Feature: domain Description: LPD16 Location: 19458-19680 bp Feature: domain Description: LPD16 Location: 19458-19680 bp Feature: domain Description: DUF4316 Location: 19728-19812 bp Feature: domain Description: DUF43 16 Location: 19728-19812 bp Feature: domain Description: LPD25 Location: 20421-20712 bp Feature: domain Description: LPD25 Location: 20421-20712 bp Feature: gene Location: 21185-22246 bp Feature: domain Description: KOG1000 Location: 21206-21416 bp Feature: domain Description: KOG1000 Location: 21206-21416 bp Feature: gene Location: 22375-24288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22693-23419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22693 -23 419 bp Feature: gene Location: 24452-24598 bp Feature: gene Location: 24975-31625 bp Feature: domain Description: YtxK Location: 27804-28638 bp Feature: domain Description: YtxK Location: 27804-2863 8 bp Feature: domain Description: COG4646 Location: 28701-31266 bp Feature: domain Description: COG4646 Location: 28701-3 1266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: NAKG01000007.1 Dorea longicatena isolate LMAG:15 MEG_15_7, whole genome shotgun sequence (376941 bp)
Overview 1 RT 1: 366956-371501 bp Neighborhood of RT #1 [366956, 371524] PRK03103 PRK03103 RVT_N RVT-GII GIIM HipB COG2932 XRE Feature: gene Location: 366956-367165 bp Feature: domain Description: PRK03103 Location: 366974-367097 bp Feature: domain Description: PRK03103 Location: 366974 -367097 bp Feature: gene Location: 367274-368284 bp Feature: domain Description: PRK03103 Location: 367400-368279 bp Feature: domain Description: PRK03103 Location: 3674 00-368279 bp Feature: gene Location: 368281-369750 bp Feature: RT Description: RVT_N Location: 368326-368563 bp Feature: RT Description: RVT_N Location: 368326-368563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368614-369262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368614 -369262 bp Feature: domain Description: GIIM Note: maturase Location: 369313-369547 bp Feature: domain Description: GIIM Note: maturase Location: 369313-36954 7 bp Feature: gene Location: 370576-371307 bp Feature: domain Description: HipB Location: 370588-370804 bp Feature: domain Description: HipB Location: 370588-370804 bp Feature: domain Description: COG2932 Location: 370960-371272 bp Feature: domain Description: COG2932 Location: 370960-371272 bp Feature: gene Location: 371363-371524 bp Feature: domain Description: XRE Location: 371375-371501 bp Feature: domain Description: XRE Location: 371375-371501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03103 (DNA polymerase IV; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), XRE (COG1476)